Template-based Modeling Results for HOFO_ECOLI

Submitted Primary Sequence

>Length 146
MNMFFDWWFATSPRLRQLCWAFWLLMLVTLIFLSSTHHEERDALIRLRASHHQQWAALYRLVDTAPFSEEKTLPFSPLDFQLSGAQLVSWHPSAQGGELALKTLWEAVPSAFTRLAERNVSVSRFSLSVEGDDLLFTLQLETPHEG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNMFFDWWFATSPRLRQLCWAFWLLMLVTLIFLSSTHHEERDALIRLRASHHQQWAALYRLVDTAPFSEEKTLPFSPLDFQLSGAQLVSWHPSAQGGELALKTLWEAVPSAFTRLAERNVSVSRFSLSVEGDDLLFTLQLETPHEG
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEHHHCCHHHCHHHHHHHHHCCCCCCEEEEEECCCEEEEEEEECCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNMFFDWWFATSPRLRQLCWAFWLLMLVTLIFLSSTHHEERDALIRLRASHHQQWAALYRLVDTAPFSEEKTLPFSPLDFQLSGAQLVSWHPSAQGGELALKTLWEAVPSAFTRLAERNVSVSRFSLSVEGDDLLFTLQLETPHEG
42100011010011000000000000000000002222223211131221112101100301332322333212112021311200000011214101001201131002001201222221110001232210001011233567
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNMFFDWWFATSPRLRQLCWAFWLLMLVTLIFLSSTHHEERDALIRLRASHHQQWAALYRLVDTAPFSEEKTLPFSPLDFQLSGAQLVSWHPSAQGGELALKTLWEAVPSAFTRLAERNVSVSRFSLSVEGDDLLFTLQLETPHEG
1	HHPRED-l	1uv7_A	0.149	0.459	1.007	threading_1	-------------------------------------------------------------------PLNQVITNST---RQFNIELIRVQPRG--E--QVWIQPLPFSQLVSWIAYQGVSVDAIDIDRG--VVEVRLQLKRG---
2	HHPRED-g	1uv7_A	0.154	0.445	1.032	threading_2	------------------------------------------------------------------------QPLNQVITRQFNIELIRVQPRG--E--QVWIQPLPFSQLVSWIAYQGVSVDAIDIDRG--VVEVRLQLKRG---
3	HHPRED-g	2w7v_A	0.178	0.500	1.031	threading_3	--------------------------------------------------------------STDVA-LSWLAALPATLGQVKDLEITSFKYDGQRGEVRISSDFQPFEQARVKLAE-KFNVEQGQLNRS--SFVLKRQ-------
4	MUSTER	3uapA2	0.216	0.795	0.809	threading_4	LMP------GTFERYRLLEWLAFISTEIHKTFFWNPESPEASKQIALGLLSRRLDYVEDRLEAGGPWLMGDR--YSVADAYLST--VLGWCE-YLKIDLS---KWPRILAYLERNQAR--AVQA-AMKAEG--LI-----------
5	SPARKS	2qdza	0.164	0.753	0.632	threading_5	---------------------------------QLLPGARDLNRIDDRQRKEQLQRDIERAATSGHTVTVHDLDFGVEGRLFDPAPLVQ---DYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFGVVDGVLKLKVEWGRIKDG
6	PROSPECT2	3hrsA	0.132	0.986	0.733	threading_6	TPNKEDYYELGTLKLVSDLYRKHRLIEVFLVHHLGYTTEEIHEEAEVLEHTDHFVERLDQLLDYPKACPHGGTIPAKGELLVEKHKLT--LEEAKEKGDYILARVHDNFDLLTYLERNGLQVHLYSLEVDGQEIQLAQPIAQQEKI
7	PPA-I	1byeA1	0.102	0.808	0.638	threading_7	EAAMVDVWIEANQYTAALNPILFQVLISPMLGGTT----DQKVVDENLEKLKKVLEVYEARLTKCKYLAGDFLSLADLNHVSVTLCLFATPYASVLDAYHVKAWWSGLPSVQKVAALMKPSA------------------------
8	HHPRED-l	2w7v_A	0.167	0.493	0.881	threading_8	----------------------------------------------------------------STDVASWLAALPATLGQVKDLEITSFKYDGQRGEVRISSDFQPFEQARVKLAE-KFNVEQGQLNRS--SFVLKRQ-------
9	HHPRED-g	1jov_A	0.172	0.596	0.821	threading_9	----------------------------------------------------------MKTTLLTPEVQHNDHAVGTAKISLQGAQLISWKPQN-AKQLSEVEPFKGVPICYPWFGGVKQPAHGTQLSHSVHKVRLEFELFSDLNI
10	SP3	2qa1a	0.114	0.959	0.481	threading_10	TEELLDSYHSHAVGKRLLMNTQAQGLLFLSGPEVQPLRDVLTELIQYGEVARHLAGMVSGLITYDVGTGSHPLLGKRMALETTATRETSSTELLHTARGVL-LDLADNPRLRARAAAWSDRV-DIVTAVPGE----VSATSGLRDT

Predicted Tertiary Structure


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TM-score=0.647 to 1uv7A SCOP code=d.67.4.1	TM-score=0.616 to 1uv7A SCOP code=d.67.4.1	TM-score=0.518 to 1uv7A SCOP code=d.67.4.1	TM-score=0.785 to 1n2aA SCOP code=a.45.1.1	TM-score=0.497 to 1fpoA SCOP code=a.2.3.1