Template-based Modeling Results for HFQ_ECOLI

Submitted Primary Sequence

>Length 102
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE
CCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEEEEEECCEEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE
554232112201210343312000000210201010200130000032222100010000000123212122332222222322311223322233324447
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE
1	MUSTER	1u1tE	0.899	0.676	3.420	threading_1	--KGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLP-------------------------------
2	SPARKS	1hk9a	1.000	0.627	3.159	threading_2	-----SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVS---------------------------------
3	PROSPECT2	1hk9A	0.984	0.627	1.407	threading_3	-----SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPV---------------------------------S
4	PPA-I	1u1tE	0.899	0.676	4.997	threading_4	--KGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLP-------------------------------
5	HHPRED-l	1u1s_A	0.909	0.647	5.434	threading_5	-----SLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLP-------------------------------
6	HHPRED-g	1u1s_A	0.909	0.647	4.752	threading_6	-----SLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLP-------------------------------
7	SP3	1hk9a	1.000	0.627	3.216	threading_7	-----SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVS---------------------------------
8	SAM-T99	1u1tE	0.899	0.676	6.050	threading_8	--KGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLP-------------------------------
9	MUSTER	3hsbA	0.439	0.647	3.068	threading_9	-----NIQDQFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLESGKQQLIYKHAISTFAPQKNVQLE-------------------------------
10	SPARKS	1kq1a	0.322	0.578	2.733	threading_10	-----NIQDKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNQGKQHLIYKHAISTYTV--------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.824 to 1u1tE TM-score=0.912 to native SCOP code=b.38.1.2	TM-score=0.824 to 1u1tE TM-score=0.912 to native SCOP code=b.38.1.2	TM-score=0.772 to 1u1tE TM-score=0.918 to native SCOP code=b.38.1.2	TM-score=0.766 to 1u1tE TM-score=0.900 to native SCOP code=b.38.1.2	TM-score=0.824 to 1u1tE TM-score=0.912 to native SCOP code=b.38.1.2

Experimental Structure

Download 3qhsC

SCOP code=b.38.1.2