Template-based Modeling Results for HDEB_ECOLI

Submitted Primary Sequence

>Length 108
MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHEETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQASNDLPN
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHEETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQASNDLPN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHCCC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHEETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQASNDLPN
443210320100000000000000111122330233120220021123110000000013322132231020110101201300210342233213201320143134
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHEETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQASNDLPN
1	MUSTER	2xuvA	0.787	0.565	1.609	threading_1	--------------------------------ESADMTCQEFIDLNP-AMTPVAWWMLHEETVYG-GDTVTLNETDLTQIP-VIEYCNPQNLYTFN------------
2	SPARKS	2xuva	0.754	0.565	2.132	threading_2	--------------------------------ESADMTCQEFIDLNP-AMTPVAWWMLHEETVYG-GDTVTLNETDLTQIPVI-EYCNPQNLYTFN------------
3	PROSPECT2	2xuvA	0.803	0.565	0.779	threading_3	--------------------------------ESADMTCQEFIDLNP-AMTPVAWWMLHEETVYG-GDTVTLNETDLTQIP-VIEYCNPQNLYT------------FN
4	PPA-I	2xuvA	0.787	0.565	1.989	threading_4	--------------------------------ESADMTCQEFIDLNP-AMTPVAWWMLHEETVYG-GDTVTLNETDLTQIP-VIEYCNPQNLYTFN------------
5	HHPRED-l	2xuv_A	1.000	0.556	8.131	threading_5	-------------------------------ESA-DMTCQEFIDLNP-AMTPVAWWMLHEETVY-GGDTVTLNETDLTQIP-VIEYC--NPQ-NLYTF----------
6	HHPRED-g	2xuv_A	1.000	0.565	7.618	threading_6	-------------------------------ESA-DMTCQEFIDLNP-AMTPVAWWMLHEETVY-GGDTVTLNETDLTQIP-VIEYC--NPQ-NLYTF---------N
7	SP3	2xuva	0.754	0.565	2.272	threading_7	--------------------------------ESADMTCQEFIDLNP-AMTPVAWWMLHEETVYG-GDTVTLNETDLTQIPVI-EYCNPQNLYTFN------------
8	SAM-T99	2xuvA	0.931	0.537	3.611	threading_8	----------------------------------ADMTCQEFIDLNP-AMTPVAWWMLHEETVY-GGDTVTLNETDLTQIP-VIEYCN---PQNLYTF----------
9	MUSTER	1dj8A	0.128	0.722	1.262	threading_9	-----------------------------NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVDVQGIATV-TPAIVQACTQDKQANFKDKVKGEWDKIKK
10	SPARKS	1dj8a	0.156	0.713	0.900	threading_10	-----------------------------NKKPVNSWTCEDFLAV-DESFQPTAVFAEALNNKDKPEDAVDVQGIATV-TPAIVQACTQDKQANFKDKVKGEWDKIKK

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.543 to 1dj8A TM-score=0.886 to native SCOP code=a.57.1.1	TM-score=0.845 to 1dj8A TM-score=0.714 to native SCOP code=a.57.1.1	TM-score=0.531 to 1dj8A TM-score=0.872 to native SCOP code=a.57.1.1	TM-score=0.539 to 1dj8A TM-score=0.882 to native SCOP code=a.57.1.1	TM-score=0.543 to 1dj8A TM-score=0.886 to native SCOP code=a.57.1.1

Experimental Structure

Download 2xuvB

SCOP code=a.57.1.1