QUARK Ab Initio Results for YNEK_ECOLI

Submitted Primary Sequence

>Length 371
MVTPVSISNYISLPDDFPVRNIAPQVKEVLKDFIDALSTIICNEEWRTSLNINSATKKIFNNLDNLSYIQRTSFRGNDTLYNEKVQFKLTYPARNGRHKENIEFQVVINLSPIYLDNFRHDGEINIFCAPNPKPVTMGRVFQTGVERVLFLFLNDFIEQFPMINPGVPIKRAHTPHIEPLPSDHHTAADYLRQFDLLVLNFISRGNFVILPRLWNNSEVHRWFVNKDPNLITAILDITDSELKEDLLQSLMDSLGSNKHVLPEVCICFLSLLAEQESPHFQNLFLFFANMLLHYHQFMNPNESDLNDVLMPASLSDDKIIKHMARRTLKLFVKNETPPKVTHEDLVKNRPRSPVRPPIPATAKTPDLPERH
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MVTPVSISNYISLPDDFPVRNIAPQVKEVLKDFIDALSTIICNEEWRTSLNINSATKKIFNNLDNLSYIQRTSFRGNDTLYNEKVQFKLTYPARNGRHKENIEFQVVINLSPIYLDNFRHDGEINIFCAPNPKPVTMGRVFQTGVERVLFLFLNDFIEQFPMINPGVPIKRAHTPHIEPLPSDHHTAADYLRQFDLLVLNFISRGNFVILPRLWNNSEVHRWFVNKDPNLITAILDITDSELKEDLLQSLMDSLGSNKHVLPEVCICFLSLLAEQESPHFQNLFLFFANMLLHYHQFMNPNESDLNDVLMPASLSDDKIIKHMARRTLKLFVKNETPPKVTHEDLVKNRPRSPVRPPIPATAKTPDLPERH
CCCCEETTTTCCTTTTTTCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHCTTTTHHHHHCCCTTTTTTTTCEEEEEETTTTCTTTTTTTTEEEEEEECCCEETTTTTTTTCEEEEETTTTTTTCHHHHCTTTTEEEEEEEHHHHHHHTTTTTTTTCCCTTTTTTTTCCTTTTTTHHHHHHHCCHHHETTTTTCCEEEEECTTTTTHHHHHHHCTTTTCEEEEETTTTHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHCCTTTTTTTHHHHHHHHHHHHHHTTTTCCCCCCHHHHHHCCCTTTTCCCCCCCCCTTTTCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position

Predicted Solvent Accessibility

>0-buried to 9-exposed
MVTPVSISNYISLPDDFPVRNIAPQVKEVLKDFIDALSTIICNEEWRTSLNINSATKKIFNNLDNLSYIQRTSFRGNDTLYNEKVQFKLTYPARNGRHKENIEFQVVINLSPIYLDNFRHDGEINIFCAPNPKPVTMGRVFQTGVERVLFLFLNDFIEQFPMINPGVPIKRAHTPHIEPLPSDHHTAADYLRQFDLLVLNFISRGNFVILPRLWNNSEVHRWFVNKDPNLITAILDITDSELKEDLLQSLMDSLGSNKHVLPEVCICFLSLLAEQESPHFQNLFLFFANMLLHYHQFMNPNESDLNDVLMPASLSDDKIIKHMARRTLKLFVKNETPPKVTHEDLVKNRPRSPVRPPIPATAKTPDLPERH
54221002221201331213300230230023002000200023302220312200220032032011023121313321221201010111144243433010100010010001213231200000021232010020022111100000011003202211220203312122012012322101100220111000002311000001012112001000332320000001022230133002200221233321022000000200232323202200000020000012011222210130002121223300220022002101343222412232013222312221202222422313349
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted Solvent Accessibility

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.369 to 1s8nA SCOP code=c.23.1.1	TM-score=0.425 to 1szaA SCOP code=a.118.9.4	TM-score=0.383 to 1e5rB SCOP code=b.82.2.4	TM-score=0.412 to 1ug3A SCOP code=a.118.1.14	TM-score=0.388 to 2fbnA SCOP code=a.118.8.1

Estimated TM-score of Model 1: 0.3160 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.3518 ±0.0778