QUARK Ab Initio Results for YMFE_ECOLI

Submitted Primary Sequence

>Length 234
MNNMFEPPKNYNEMLPKLHKATFLNTLIYCILLVIYEYIPLITLPTKYVPPIKDHESFINWALSFGILPCAFAIFAYLISGALDLHNNAAKLLRVRYLWDKHLIIKPLSRRAGVNRKLNKDEAHNVMSNLYYPEVRKIEDKHYIELFWNKVYYFWIFFEFSIIALISFLIIFFCKQMDIFHVEGSLLSLFFFVILSFSVSGIIFALTVKPRTESQVGKIPDDKIKEFFTKNNIN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MNNMFEPPKNYNEMLPKLHKATFLNTLIYCILLVIYEYIPLITLPTKYVPPIKDHESFINWALSFGILPCAFAIFAYLISGALDLHNNAAKLLRVRYLWDKHLIIKPLSRRAGVNRKLNKDEAHNVMSNLYYPEVRKIEDKHYIELFWNKVYYFWIFFEFSIIALISFLIIFFCKQMDIFHVEGSLLSLFFFVILSFSVSGIIFALTVKPRTESQVGKIPDDKIKEFFTKNNIN
CTTTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTTTTTTTTTHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHCCTTTTTHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTTHHHHHHHHHHHHCHHHHHHHTTTTCCCHHHHCCCCHHHHHHHHTTTTTT
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position
Download Distance Profile from Fragments

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNNMFEPPKNYNEMLPKLHKATFLNTLIYCILLVIYEYIPLITLPTKYVPPIKDHESFINWALSFGILPCAFAIFAYLISGALDLHNNAAKLLRVRYLWDKHLIIKPLSRRAGVNRKLNKDEAHNVMSNLYYPEVRKIEDKHYIELFWNKVYYFWIFFEFSIIALISFLIIFFCKQMDIFHVEGSLLSLFFFVILSFSVSGIIFALTVKPRTESQVGKIPDDKIKEFFTKNNIN
543222224212200120120100100000000001310211212132012133032002001211111000000010010001012200200101100232000200021121224124321120013011230241323200100001000000001000000000000000321311202021001001002211120002212223323221250233103201243324
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.530 to 1yf2A SCOP code=d.287.1.2	TM-score=0.515 to 1rq0A SCOP code=e.38.1.1	TM-score=0.460 to 1v0dA SCOP code=d.4.1.7	TM-score=0.483 to 1k30A SCOP code=c.112.1.1	TM-score=0.514 to 1rx0A SCOP code=a.29.3.1

Estimated TM-score of Model 1: 0.3371 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.3744 ±0.0778