QUARK Ab Initio Results for YHBV_ECOLI

Submitted Primary Sequence

>Length 292
MKYSLGPVLWYWPKETLEEFYQQAATSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAGSGKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNMCAERKLPFVAGHALNCYNAVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLNGIQTMSGYVYNLGNELASMQGLVDVVRLSPQGTDTFAMLDAFRANENGAAPLPLTANSDCNGYWRRLAGLELQA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MKYSLGPVLWYWPKETLEEFYQQAATSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAGSGKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNMCAERKLPFVAGHALNCYNAVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLNGIQTMSGYVYNLGNELASMQGLVDVVRLSPQGTDTFAMLDAFRANENGAAPLPLTANSDCNGYWRRLAGLELQA
CCTTTTHHHHTTTTTCHHHHHHHHHHCCCCEEEECCCCTTTTTTTCHHHHHHHHHHHHHCCCEEEEEECCCTTTTHHHHHHHHHHHCCCCEEETTTTHHHHHHHHCCCCEEEECCCTTTTHHHHHHHHHCCCEEEEETTTTCHHHHHHHHHHHHHHTTTTTTTTEEEEECHHHHHHHHHHHHHHTTTTTTCTTTTTTCETTTTTTTECTTTTTTTTTTTTEECCHHHHHHHHHHHHHHHHTTTTEETTTTCCHHHHHHHHHHHHCCCCTTTTTTTTTTTTTTCCTTTTTCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position
Download Distance Profile from Fragments

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKYSLGPVLWYWPKETLEEFYQQAATSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAGSGKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNMCAERKLPFVAGHALNCYNAVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLNGIQTMSGYVYNLGNELASMQGLVDVVRLSPQGTDTFAMLDAFRANENGAAPLPLTANSDCNGYWRRLAGLELQA
5413101011001332012001100301000000022101222213211012002001212100000000103122101102300421310000001000100132312000001010111200200242102000001202331012003203321332301010000010000000000012023323330310023133011021333232122201001101000002101102210100102331220110020022223222212221212010002321102224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

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Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.368 to 1nu5A SCOP code=c.1.11.2	TM-score=0.396 to 1lqaA SCOP code=c.1.7.1	TM-score=0.365 to 1ffuC SCOP code=d.87.2.1	TM-score=0.403 to 1kpsB SCOP code=a.118.12.1	TM-score=0.372 to 2c4nA SCOP code=c.108.1.14

Estimated TM-score of Model 1: 0.3287 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.3653 ±0.0778