QUARK Ab Initio Results for YDJO_ECOLI

Submitted Primary Sequence

>Length 267
MFSTNLIQSNYGDLNIKSLAFDSFKERLQSTMTALTFFISTGQCDCDEIAESNFNYMIAYMSNINYDASKPGAPALSFDTYLQDNVKYRVIINNLYGSEIRIRGINKDFIGMDVTSVFRPEKMTNLISIKNRLVIHYLRTIYYEQNYIHPVGSIFAAIQKNESLLKFPSIISMLNINLLFNPLNLPGMGSGVLEDIMSIPDSSLRKRLGYEVLSFSLQAHSLSQECIDKLDIFFADDLFKYESVCIAAMEHLKSKATAPIQNGPLPA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MFSTNLIQSNYGDLNIKSLAFDSFKERLQSTMTALTFFISTGQCDCDEIAESNFNYMIAYMSNINYDASKPGAPALSFDTYLQDNVKYRVIINNLYGSEIRIRGINKDFIGMDVTSVFRPEKMTNLISIKNRLVIHYLRTIYYEQNYIHPVGSIFAAIQKNESLLKFPSIISMLNINLLFNPLNLPGMGSGVLEDIMSIPDSSLRKRLGYEVLSFSLQAHSLSQECIDKLDIFFADDLFKYESVCIAAMEHLKSKATAPIQNGPLPA
CCCHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTHHHHHHHHHHHHHHHHHHCCCTTTTTTTTTTTEEEEETTTTEEEEEEETTTTTEEEEETTTTTTCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTTHHHHHHHHCHHHHHCHHHHHHHHHHHHCCTTTTTTTTTTHHHHHHCCCHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTTTCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position
Download Distance Profile from Fragments

Predicted Solvent Accessibility

>0-buried to 9-exposed
MFSTNLIQSNYGDLNIKSLAFDSFKERLQSTMTALTFFISTGQCDCDEIAESNFNYMIAYMSNINYDASKPGAPALSFDTYLQDNVKYRVIINNLYGSEIRIRGINKDFIGMDVTSVFRPEKMTNLISIKNRLVIHYLRTIYYEQNYIHPVGSIFAAIQKNESLLKFPSIISMLNINLLFNPLNLPGMGSGVLEDIMSIPDSSLRKRLGYEVLSFSLQAHSLSQECIDKLDIFFADDLFKYESVCIAAMEHLKSKATAPIQNGPLPA
553321122211201011000220231021011100000021201032002200100000012011302322011010001024312010000000111010200244120000201001210120010112000100110002312111101000002322210202200100001000121102110200022012023220143121100100010220122002201010021002011000000210323121223313138
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted Solvent Accessibility

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.414 to 1et1A SCOP code=j.15.1.1	TM-score=0.451 to 1fewA SCOP code=a.7.4.1	TM-score=0.441 to 2iu5A SCOP code=a.4.1.9	TM-score=0.445 to 2dfkA SCOP code=a.87.1.1	TM-score=0.442 to 1kd9A SCOP code=h.1.3.1

Estimated TM-score of Model 1: 0.2978 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.3323 ±0.0778