QUARK Ab Initio Results for YDCD_ECOLI

Submitted Primary Sequence

>Length 160
MLQIIRGKLVIFLITLCLFVVYLGFDNNSNSDIVFYGHKTPKSVEIYLSEKNIIYKIINDQKISRGNGHFISIMVNNYRTHCGVVDINLNFFNDILYSVRLKNISKLENMEFCATKQRVYFSDKNKKASYKIINYGDYYDVDYYDNNLKNEVFDWIGKWS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MLQIIRGKLVIFLITLCLFVVYLGFDNNSNSDIVFYGHKTPKSVEIYLSEKNIIYKIINDQKISRGNGHFISIMVNNYRTHCGVVDINLNFFNDILYSVRLKNISKLENMEFCATKQRVYFSDKNKKASYKIINYGDYYDVDYYDNNLKNEVFDWIGKWS
CEEETTTTTEHHHHHHHHEEEEETTTTTCCTTTTTTTTTTTTTTEEEETTTTTEEEEECCCEETTTTCEEEEEETTTTTTTTTEEEEEHHHHHHHHHHHHTTTTHHHHHHHHHHCTTTTEEETTTTCEEEEEETTTTTEEEECCTTTTTHHHHHHTTTTT
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position
Download Distance Profile from Fragments

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLQIIRGKLVIFLITLCLFVVYLGFDNNSNSDIVFYGHKTPKSVEIYLSEKNIIYKIINDQKISRGNGHFISIMVNNYRTHCGVVDINLNFFNDILYSVRLKNISKLENMEFCATKQRVYFSDKNKKASYKIINYGDYYDVDYYDNNLKNEVFDWIGKWS
4312120200000000000000000223231100010241232010001121000100232202422010000001113120000000010011001002023022032031012222000223243010100110110001111130222002112424
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted Solvent Accessibility

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.407 to 2ffgA SCOP code=d.317.1.1	TM-score=0.403 to 3d3dA SCOP code=d.2.1.4	TM-score=0.429 to 1zkiA SCOP code=d.38.1.5	TM-score=0.412 to 1maeH SCOP code=b.69.2.1	TM-score=0.406 to 1e8lA SCOP code=d.2.1.2

Estimated TM-score of Model 1: 0.2759 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.3088 ±0.0778