QUARK Ab Initio Results for YCED_ECOLI

Submitted Primary Sequence

>Length 173
MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAVLNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQKPNPFAVLASLKRK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAVLNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQKPNPFAVLASLKRK
CCCTTTTTTTCHHHHHHHCCCEEEEEEHHHHHHHHHHTTTTTTTTTEEEEEETTTTTEEEEEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEECCHHHHHHCTTTTCCEEETTTTTTCHHHHHHHHHHHCTTTTTTTTTTTTCCCTTTTCCCCCTTTTCCCCHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

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Download Predicted Starting Beta-turn Position
Download Distance Profile from Fragments

Predicted Solvent Accessibility

>0-buried to 9-exposed
MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAVLNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQKPNPFAVLASLKRK
55423012200012004432312010103103200321232322010102001344310002020202020201201220202020200001022331133123223201013223010110001100110211111223203123232222322332433101110231344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

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Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.439 to 1pfzA SCOP code=b.50.1.2	TM-score=0.415 to 1vr7A SCOP code=d.156.1.2	TM-score=0.413 to 2gnoA SCOP code=a.80.1.1	TM-score=0.406 to 1ca9A SCOP code=b.8.1.1	TM-score=0.427 to 2iv9A SCOP code=b.1.10.1

Estimated TM-score of Model 1: 0.3208 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.3569 ±0.0778