QUARK Ab Initio Results for YBJX_ECOLI

Submitted Primary Sequence

>Length 330
MVKSTPCITIDFMNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRECMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MVKSTPCITIDFMNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRECMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG
TTTTCCEEEEEEEEHHHCTTTTTTCCCCCCHHHHHHHHHCTTTTTTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHTTTTTHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCTTTTEEEEEETTTTTTTEEEEETTTTTCCCEEEEEEEETTTTCEEEEEEEEETTTTTTEEEEEEEEETTTTTTTHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHCCCEEEEETTTTTEEECCETTTTTTTEEECHHHHHHTTTTEECCCCCEECCCCTTTTCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position

Predicted Solvent Accessibility

>0-buried to 9-exposed
MVKSTPCITIDFMNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRECMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG
554322001000010130232212223211001000000323122131111111101000000000300120022013132012003311310120011001120213200200120010024002230011013231010020213423201000101121343010000011232210010000002242310000000201434223300220022022110110000000100330302100001232100102112334120100011003202022133200102132223322302231132023112002101220132245
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted Solvent Accessibility

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.408 to 1et1A SCOP code=j.15.1.1	TM-score=0.368 to 2r2vA SCOP code=h.1.3.1	TM-score=0.435 to 2r2vA SCOP code=h.1.3.1	TM-score=0.440 to 1et1A SCOP code=j.15.1.1	TM-score=0.423 to 1et1A SCOP code=j.15.1.1

Estimated TM-score of Model 1: 0.3357 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.3729 ±0.0778