QUARK Ab Initio Results for NDPA_ECOLI

Submitted Primary Sequence

>Length 335
MSLDINQIALHQLIKRDEQNLELVLRDSLLEPTETVVEMVAELHRVYSAKNKAYGLFSEESELAQTLRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGFVLFCHYRYLAVEYLLVAVLSNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETNPESTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLLQAVDDFTAEAQLDKAERQNVRQQVYSYCNEQLQAGEEIELKSLSKELAGVSEVSFTEFAAEKGYELEESFPADRSTLRQLTKFAGSGGGLTINFDAMLLGERIFWDPATDTLTIKGTPPNLRDQLQRRTSGGN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MSLDINQIALHQLIKRDEQNLELVLRDSLLEPTETVVEMVAELHRVYSAKNKAYGLFSEESELAQTLRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGFVLFCHYRYLAVEYLLVAVLSNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETNPESTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLLQAVDDFTAEAQLDKAERQNVRQQVYSYCNEQLQAGEEIELKSLSKELAGVSEVSFTEFAAEKGYELEESFPADRSTLRQLTKFAGSGGGLTINFDAMLLGERIFWDPATDTLTIKGTPPNLRDQLQRRTSGGN
CCCEEEEEEEEEEEETTTTTEEEETTTTCCCCCHHHHHHHHHHHHHTTTTCCCCETTTTTTTHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHCCTTTTCCEEEEEEETTTTTEEEEEEEETTTTTEEETTTTCEEECCCCCHHHCCEEEEEECHHTTTTTTTTCEEEEEECTTTTTHHHHHHHHHCCTTTTCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHCTTTTCHHHHHHHHCCCCCCTTTTCCCHHHHHCCEEEEETTTTTEEEECHHHCCCCEEETTTTTEEETTTTCHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSLDINQIALHQLIKRDEQNLELVLRDSLLEPTETVVEMVAELHRVYSAKNKAYGLFSEESELAQTLRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGFVLFCHYRYLAVEYLLVAVLSNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETNPESTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLLQAVDDFTAEAQLDKAERQNVRQQVYSYCNEQLQAGEEIELKSLSKELAGVSEVSFTEFAAEKGYELEESFPADRSTLRQLTKFAGSGGGLTINFDAMLLGERIFWDPATDTLTIKGTPPNLRDQLQRRTSGGN
44120110000000234433110001322133232012001201411333332100024313013003312422330010021001201210231321410000001022230100000001122112013312112121020220100000102313333332210000213233300200110020232132321120012002200342313322132012201200231143233131310053012223210220033222303421212321023012010212101020102002320011322120002201330132024323324
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted Solvent Accessibility

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.387 to 2aplA SCOP code=a.258.1.1	TM-score=0.379 to 2aplA SCOP code=a.258.1.1	TM-score=0.378 to 1dguA SCOP code=a.39.1.5	TM-score=0.385 to 1h74A SCOP code=d.14.1.5	TM-score=0.389 to 2aplA SCOP code=a.258.1.1

Estimated TM-score of Model 1: 0.3276 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.3641 ±0.0778