QUARK Ab Initio Results for YFDK_ECOLI


  Submitted Primary Sequence

>Length 146
MNYIYSATTNSFYPLEMKEDYTQAGSWPDDAVEVDEQVYIEFSGLPPKGKIRIAGENGFPAWSEIPPPTHEEQIAAAELKKQQLINQANDYMNSKQWAGKAAIGRLKGEELAQYNLWLDYLDALELVDTSSAPDIEWPTPPAVQAR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MNYIYSATTNSFYPLEMKEDYTQAGSWPDDAVEVDEQVYIEFSGLPPKGKIRIAGENGFPAWSEIPPPTHEEQIAAAELKKQQLINQANDYMNSKQWAGKAAIGRLKGEELAQYNLWLDYLDALELVDTSSAPDIEWPTPPAVQAR
CEEEETTTTCEEECHHHHHHHHHCCCCTTTTEECCHHHHHHHTTTTTTTTEEEETTTTCEETTTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHCTTTTTCCCCTTTTTTTTCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position
Download Distance Profile from Fragments

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MNYIYSATTNSFYPLEMKEDYTQAGSWPDDAVEVDEQVYIEFSGLPPKGKIRIAGENGFPAWSEIPPPTHEEQIAAAELKKQQLINQANDYMNSKQWAGKAAIGRLKGEELAQYNLWLDYLDALELVDTSSAPDIEWPTPPAVQAR
32010013210000220120024121013200102230012012222412110013311101032221233211100222122102102200201210040222413231111121012002003201122012031122222436
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Download Predicted Solvent Accessibility

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.536 to 2hguK
SCOP code=d.99.1.1
TM-score=0.519 to 1kd9A
SCOP code=h.1.3.1
TM-score=0.531 to 1kd9A
SCOP code=h.1.3.1
TM-score=0.518 to 1nh2D
SCOP code=a.32.1.1
TM-score=0.490 to 7pckA
SCOP code=d.3.1.1
Estimated TM-score of Model 1: 0.3708 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.4104 ±0.0778