QUARK Ab Initio Results for YDBJ_ECOLI


  Submitted Primary Sequence

>Length 88
MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGLKASMSSSGEANCAMIGGSLSVARQLDGTAIGMCALPNGKRCSEQSLAAGSCGSY
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--------10--------20--------30--------40--------50--------60--------70--------80
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGLKASMSSSGEANCAMIGGSLSVARQLDGTAIGMCALPNGKRCSEQSLAAGSCGSY
CHHHHHHHHHHHHHHHCCCCCCCCCCTTTTCCCCTTTTCCHHHHHHHHCCCEEEEEETTTTTEEEEEETTTTTEEEHHHHHCTTTTTT
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--------10--------20--------30--------40--------50--------60--------70--------80
Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position
Download Distance Profile from Fragments

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGLKASMSSSGEANCAMIGGSLSVARQLDGTAIGMCALPNGKRCSEQSLAAGSCGSY
4210110000000001022332332222322222312110101110131110010122231210000103303201000012221234
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--------10--------20--------30--------40--------50--------60--------70--------80
Download Predicted Solvent Accessibility

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.510 to 3elgA
SCOP code=d.98.2.1
TM-score=0.476 to 1pb6A
SCOP code=a.4.1.9
TM-score=0.469 to 1qzmA
SCOP code=c.37.1.20
TM-score=0.472 to 3bzkA
SCOP code=a.60.2.6
TM-score=0.471 to 2cw1A
SCOP code=k.46.1.1
Estimated TM-score of Model 1: 0.3756 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.4155 ±0.0778