QUARK Ab Initio Results for YAFY_ECOLI

Submitted Primary Sequence

>Length 147
MKRKTLPLLALVATTLFLIACDDRSDDLKAISKFKDLTPPRFSDVVSHQDDVSEEWSQVDYLSGPTLQVLRTRQSPDGCEDGSYYYLVDMQEKTVQPLMNALCIADNIKLEYQEVTDPYTKEKYFEYAHDGKLMGQLLIPSNPDNQE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MKRKTLPLLALVATTLFLIACDDRSDDLKAISKFKDLTPPRFSDVVSHQDDVSEEWSQVDYLSGPTLQVLRTRQSPDGCEDGSYYYLVDMQEKTVQPLMNALCIADNIKLEYQEVTDPYTKEKYFEYAHDGKLMGQLLIPSNPDNQE
CCCHHHHHHHHHHHHHHHHHCTTTTTTTHHHHHTTTTTTTCHHHTTTTTTHHHHHHHHCTTTTTTTEEEEETTTTCCCTTTTTTTEEEECHHHHHHHHHHHHHHCCCCEEEEEETTTTTTTCEEEEETTTTTTTTEEECCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position
Download Distance Profile from Fragments

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKRKTLPLLALVATTLFLIACDDRSDDLKAISKFKDLTPPRFSDVVSHQDDVSEEWSQVDYLSGPTLQVLRTRQSPDGCEDGSYYYLVDMQEKTVQPLMNALCIADNIKLEYQEVTDPYTKEKYFEYAHDGKLMGQLLIPSNPDNQE
554321211100000000210234233130013023121230231023323012201322222011020021231232034120000010122201100100000320201012122322422001112203210101023333468
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Predicted Solvent Accessibility

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.397 to 1xtdA SCOP code=b.34.5.2	TM-score=0.482 to 2nvmB SCOP code=d.326.1.1	TM-score=0.454 to 1p68A SCOP code=k.8.1.1	TM-score=0.438 to 1a38A SCOP code=a.118.7.1	TM-score=0.481 to 3elgA SCOP code=d.98.2.1

Estimated TM-score of Model 1: 0.2988 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.3334 ±0.0778