MetaGO result for job id PF11185

User Input

>k87_9151251_1_1/3-152 (150 residues)
KICCFSENPKSILMWSHYANYHTGFCIGYDFHELGNEDVRTRSIYPVVYSDEMFNATGVF
GSPKNVNNILYLNQVALMKSTEWSYEKEWRLVFGNMLIQQEMPYRMPKPKCVILGAKISS
NNEDSIRKICNRKNIEVLKLYMRHNQFVLD

Download query sequence and structure

Proteins with similar structure

Top 10 structural analogs in PDB (as identified by TM-align)

Rank	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov.	Download Alignment
1	3pflA	0.45	5.01	0.051	0.780	Download
2	1ddzA	0.44	5.28	0.053	0.840	Download
3	2yxzA	0.43	5.05	0.059	0.767	Download
4	4k90A	0.43	5.06	0.039	0.760	Download
5	2yyeB	0.40	5.22	0.070	0.727	Download
6	2btuA	0.38	5.03	0.077	0.687	Download
7	2z1fA	0.38	5.21	0.036	0.693	Download
8	2z01A	0.37	4.98	0.056	0.680	Download
9	2z1uA	0.37	5.08	0.064	0.647	Download
10	4pkcA1	0.37	5.42	0.030	0.680	Download

(a)	Query structure is shown in cartoon, while the structural analog is displayed using backbone trace.
(b)	Ranking of proteins is based on TM-score of the structural alignment between the query structure and known structures in the PDB library.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov. represents the coverage of the alignment by TM-align and is equal to the number of structurally aligned residues divided by length of the query protein.

Predicted Gene Ontology (GO) Terms

Molecular Function (MF)

GO term

Cscore^GO

Name

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Molecular Function. Confidently predicted terms are color coded by Cscore^GO:

[0.13,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Biological Process (BP)

GO term	Cscore^GO	Name
GO:0008152	0.01	metabolic process

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Biological Process. Confidently predicted terms are color coded by Cscore^GO:

[0.08,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Cellular Component (CC)

GO term	Cscore^GO	Name
GO:0097632	0.01	extrinsic component of pre-autophagosomal structure membrane
GO:0005758	0.01	mitochondrial intermembrane space
GO:0005618	0.01	cell wall
GO:0000407	0.01	pre-autophagosomal structure

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Cellular Component. Confidently predicted terms are color coded by Cscore^GO:

[0.14,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Reference:

Chengxin Zhang, Peter L Freddolino, and Yang Zhang. (2018) MetaGO: A Structure and Protein-Protein Interaction Network Based Pipeline for Automated Protein Function Annotations. Journal of Molecular Biology.

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