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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.06 | 2e5y0 | 0.952 | 0.76 | 0.214 | 0.990 | 0.95 | III | Download | 9,10,28,42,44,67,69,71,78,79,80 |
| 2 | 0.03 | 1fs00 | 0.773 | 1.21 | 0.122 | 0.818 | 0.76 | III | Download | 8,9,10,11,13,29,40,41,42,43,69,70,71,72 |
| 3 | 0.01 | 1o7dD | 0.520 | 4.19 | 0.041 | 0.879 | 0.47 | UUU | Download | 33,34,35 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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