ZDOCK Docking: You can dock the scaffold and receptor chains together using ZDOCK by checking 'yes'. ZDOCK is a Fast Fourier Transform based protein docking programs authored and maintained by Zhiping Weng's lab (ZLAB) at the University of Massachusetts Medical School.

ZDOCK webserver

Reference: Pierce BG, Wiehe K, Hwang H, Kim BH, Vreven T, Weng Z. (2014) ZDOCK Server: Interactive Docking Prediction of Protein-Protein Complexes and Symmetric Multimers. Bioinformatics 30(12): 1771-3.