Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | DPRYQELPQWQKDLFWIIPAKDTLIRIPKPFEVGILFGTSVERMLDWMYKKDPNAFKGYGKTVWDAMVPGWMPTALLPIVEWTSNYSYFMERNIVPPSQEKLPPKLQYGPNTSAIGKWIGEHAITPWTPQGVSPAKVDNTIRGYTGGLGGLAMTLGDLVAGEFDKRPSLKWTEYPG |
1 | 5cwjA | 0.10 | 0.08 | 2.96 | 0.70 | SPARKS-K | | ------------DSEEEQERIRRILKEARKSGTEESLRQAIEDVAQLAKKQDSEVLEEAIRVILRIAKESGSEEALRQAIRAVAEIAKEAQD----------------SEVLEEAIRVILRIAKESGSE-----EALRQAIRAVAEIAKEEAIRVIRQIAEESGSEEARRQAERAE |
2 | 5cwkA | 0.15 | 0.12 | 4.23 | 0.81 | FFAS-3D | | NDEKEKLKELLKRA-------EELAKSPDPEDLKEAVRLAEEVVRERPGSNLAKKALEIILRAAEELAKLPDPEALKEAVKAAEKVREQPGSNLAKKALE----------IILRAAEELAKL---------PDPEALKEAVKAAESELAKKALEIIERAAEELKKSPDPEAEERPG |
3 | 1hueA | 0.13 | 0.04 | 1.38 | 0.24 | HHpred | | -------------------------------------------------------------------------------------------------------------MNKTELINAVAET-------SGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGERAARK------ |
4 | 3we0A | 0.10 | 0.09 | 3.40 | 0.72 | MUSTER | | ETKPFPNPLTPASRSTVIDLEGQTYYAEKAADLPALFQEVTDAWADALES--GARFGDIQQAIRDR-DVPRLKELWNTLVPLWDDRTFY-------DFVATSKAFAKLSFQHREVFGQVGFGTGGWDSDFPNSMLEIFRVVMTNCGGVEQVPQGIWRHVPERCAHWPGTSLSSLHG |
5 | 2of3A | 0.11 | 0.07 | 2.48 | 0.71 | CNFpred | | ----------------------------------LLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADPRSLLSNSDLLLKWCTLRFFE------------TNPAALI--KVLELCKVIVELIRD--TETPMSQEEVSAFVPYLLLKMRTSVRDIVNVLSDVV------------- |
6 | 1vt4I3 | 0.11 | 0.07 | 2.66 | 0.78 | HHsearch-2 | | -----------------------EYALHRSIVDHY--------NIPKTFDDDPPYLDQYYSHIGHHLKNIEHPERMTLFFRFLEQKI-RHDSTAWNASGSIL--------NTLQQLKFYKPY-------ICDNDPKYERLVNA-----------ILDFLPKIEENLICSKYTDLLR |
7 | 5cwjA | 0.09 | 0.07 | 2.85 | 0.77 | Neff-PPAS | | --DSEEEQERIRRILKEARKSGT----------EESLRQAIEDVAQLAKKQDSEVLEEAIRVILRIAKESGSEEALRQAIRAVAEIAKEA-------------QDSEVLEEAIRVILRIAKESGSEEALRQAIRAVAEIAKEAQDPRVLEEAIRVIRQIAEESGSEEARRQAERAE |
8 | 5fbmA1 | 0.05 | 0.01 | 0.52 | 0.27 | HHsearch | | -------------------------------------------------------------------------------------------------------------ANKQDLIAKVAEA-------TELTKKDSAAAVDAVFSAVSSYLA----------------------- |
9 | 5cwjA | 0.08 | 0.06 | 2.51 | 0.59 | SP3 | | -------------------------------DSEEEQERIRRILKEARKSGTEESLRQAIEDVAQLAKKSQDSEVLEEAIRVILRIAKESGSEEALRQAIRAVAEIAKEAQDSEVLEEAIRVILRIAKESG-SEEALRQAIRAVAPRVLEEAIRVIRQIAEESGSEEARRQAERAE |
10 | 3nrgA | 0.08 | 0.07 | 2.72 | 0.62 | PROSPECTOR2 | | GETFFNLPEEKRS------------RLAKGLYLIQLGIEQKTAFLRQTPPASTTDFAYLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETQVIRHGSF----------AYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTELGNHLIELLREGGIVLLQPARRVIEQRRR |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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