>PF18853 (241 residues) ALAELAAVDELFQNPKATGKRTLKGVFEAIDPTVRFIGDMERSDEEEASGAEQRFLLRTA KGRDFYIFQTPDDVWTDISQLHEGGSGARIYQAIAEYAFNTDRTFIGDPAGLTDIALRRR NEAMLSSALKHGTTQHLEPHERQLKGEKAIGVPPLHWKNGDDLGNIRSLIDVSLGSIKSK FPEIDDARYDFETRTFRDSEGEPLSDEVLARWASSLRGVREARAGSATLKRSILLNTLSR Q |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | ALAELAAVDELFQNPKATGKRTLKGVFEAIDPTVRFIGDMERSDEEEASGAEQRFLLRTAKGRDFYIFQTPDDVWTDISQLHEGGSGARIYQAIAEYAFNTDRTFIGDPAGLTDIALRRRNEAMLSSALKHGTTQHLEPHERQLKGEKAIGVPPLHWKNGDDLGNIRSLIDVSLGSIKSKFPEIDDARYDFETRTFRDSEGEPLSDEVLARWASSLRGVREARAGSATLKRSILLNTLSRQ | |||||||||||||||||||
1 | 3gv0A | 0.07 | 0.06 | 2.53 | 0.61 | SPARKS-K | GITEVLSTTQYTPHIHAKDSVPIRYILETGSADIISKIEPNDPRVRFTERNPFVTHGRSDGIEHAFHDFD----------------NEAYAYEAVERLAQCGRAVIVPPSRF---SFHDHARKGFNRGIRDFGLTEFPIAVTIETPLEKIRDFGQRLQSSDRPDGIGSSTIALVAGFEAAGVKIGEVSKQSAEF-----------------LNWIKPQNEDIKLAGRELAKALLARINGEA | |||||||||||||
2 | 1kanA | 0.09 | 0.08 | 3.02 | 0.62 | FFAS-3D | -----------MNGPIIMTREERMKIVHEIGDDVKAIGSLGRQTDGPYSDIEMMCVMSTEEAEFSHEWTTGE-WKVEVNFYSEEILLDYASQVESDWPLTHGQFPIYDSGGYLEKVYQTKFHDAICALIVEELFEYAGKWRNIR--------------VQGPTTFLPSLTVQVAMAGAMLIGLHHRICYTTSASVLTEAVKQSDLPSGYDHLCQFVMSGQLSDSEKLLESLENFWNGIQE- | |||||||||||||
3 | 3k13C | 0.10 | 0.07 | 2.79 | 0.27 | HHpred | --------SRKFLRLV-NEKKEALSIARQQEDGALVIDVNDDGLLDAR--TE-TTFLN-------LISIARVPV-IDSSK-----------WEVIEAGLKQGKSIVNSISLKEGE---EVFLEHARIIKQYGAATVV-AFDEK-------GQA------DTA-ARKIEVCERAYRLLVKVGFNPHDIIFDPNVAT-GIE-EHNNAVDATGWIRKNLPGSNLSFSFRGNYIREA-HAVFL-- | |||||||||||||
4 | 5cwmA | 0.12 | 0.11 | 3.83 | 0.67 | MUSTER | --------------DPEDELKRVEKLVKEAEELLRQAKEKGSEEDLEKALRTAEEAAREAKKVLEQAEKEGDEVALRAVEL-----VVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVALRAVELVVRVAELLLRIA--KESGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVARRAELVKRVAELLERIARESGSEEAKERAERVREEARELQERVKE | |||||||||||||
5 | 3owoA | 0.11 | 0.06 | 2.24 | 0.64 | CNFpred | ------------------------------------------------------CIITDEVHVKMAIVDRPMVSVNDPLLMV--ATGMDALTHAFEAYSSTAATPITD---ACALKAASMIAKNLKTACDNG----------------------------KDMPAREAMAYAQFLAGMAFN----NASLG--------------YVHAMAHQLGGYNLPHGVCNAVLLPHVLAYNASVVAG | |||||||||||||
6 | 2pffA1 | 0.11 | 0.10 | 3.61 | 0.68 | HHsearch-2 | VLQGLLQGGAKVVVTTSRFSKQVTDYYQSIAKGSTLIVVPFQGSKQVEALIEFIYDT-EKNGLFAAIPEQGELEHIDSKEFAHRIMLRMMGCVKKQKSARGAQVILPMSPNHGTFGGGMYSESKLSLETLFNR-WHSESWANQLTVNNAEGIEKMVRTFSQKEMAFNLLGLLEVVELCQKSP----VMADLNGGQFV-PELKEFTAKLRKELVE-----------TSEVRKAVSIEALEHK | |||||||||||||
7 | 5xn7A1 | 0.10 | 0.10 | 3.52 | 0.90 | Neff-PPAS | LVQEGFEVRSTILLDNPQQKSIERFILANFDNFEQ-----------PDELFLVDNKVLSHHDGRTRILARKANVELSVTELLRGESYQQVIDALTEYHASTAEHADYELTSVEKLLNLRKQVEGYVLGHPDSGRVQANALLNQVNSRLEAVSVLVVSEQSIKAHDSFSHLYDQLDNAN--LKESKHLYLDGNGDFVTKGKGKLGGSDAVLEKVKAAVSHEYGQVVADTIFAGLSANDLAKD | |||||||||||||
8 | 4w6qA1 | 0.08 | 0.02 | 0.83 | 0.19 | HHsearch | ---------------------------------------------------------------------ACMRTYINLNGHSITSTAQIAQNMVTDIAVSLGFRELGIHDTDSPEEMSKRLDGICS-GLRKNDIVI--------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 1dvrA | 0.08 | 0.07 | 2.63 | 0.51 | SP3 | QAPNLQERFH---AAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNP----ACKNGFILVGFPRTI-PQAEKLDQMLKEQGTPLEKAIELK---VDDELLVARITGRLIH-PASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQTEPIVDFYK------KTGIWAGVDASQPPATVWADILNKLGKN---------------------- | |||||||||||||
10 | 5xn7A1 | 0.10 | 0.09 | 3.41 | 0.84 | PROSPECTOR2 | NLLVQEGSTILLDNPQQKSIERFILANFDNFEQPDELFLVDN-----------KVLSHHDGRTRILARKANVELSVTELLDAAHVSGQQVIDALTEYHASTAEHADYELTSVEKLLNLRK--QVEGYVLGHPDSGRVQANALLNQVNSRLEAVSVLVVSEQSIKAHDSFSHLYDQLDNANLKESKHLYLDGNGDFVTKGKGLGGSDAVLEKVKAAVSHEYGQVVADTIFAGNKVHQAIEQH | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |