Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | STISNVAEMSGALLGTVGKFLKPGTRKVISATTRHISPRLTGFISRTTPRALDYTKMIKDKNIITGFRDFAKATGWNGIAGETFEEFMEGTLNAVTIGDQGLEDIYNWENALQTITTVGIMSVGMSSAAATLRAGAKRKIKA |
1 | 4uosA | 0.15 | 0.15 | 4.99 | 0.75 | SPARKS-K | | KMLEKMIEEIKKMLEKAIKKVKEMLEKMIKEIKKKMVIELAKILKKAKEMAEKILKKVKELEVKKMLEKMIEEIKLEKAIKEMLEKMIKEIKKMLENGEDS-EKILKKEMAEKILKMVIELAEKILKKAKEMAEKILKKVKE |
2 | 5oheA | 0.07 | 0.06 | 2.62 | 0.75 | FFAS-3D | | TVFEELKRYDERALRSLHGAAAPHFPRLAEEFYDRIHEGARTALVGGESQVGHLKVTMIDEAYWDRRYRIGRVHVRIGLPQHYMFGAMNVHRTGLAAYERFHGDPPELERVRNALGKVLDLELAVMLHT------------- |
3 | 1a87A2 | 0.13 | 0.11 | 3.90 | 0.31 | HHpred | | GMGDKLGEYLGVKYKNVAKEVAASLNKVLANPKMKVNKSDK-------DAIVNAWKQVNAKDMANKIGNLGKAFKVADLAI-KVEKIREKSIEGYNTGN--WGPLLLEVESWIIGVVAGVAISLFGAVLSFL---------- |
4 | 1st6A | 0.14 | 0.14 | 4.80 | 0.67 | MUSTER | | REILGTCKTLGQMTDQLADLRARGATPMAMQKAQQVSQGLDLLTAKVENAARKLEAMTNSKQAIAKKIDAAQNWLADPNGGSEGEEHIRGIMSEARKVAELCEEPKERDDILRSLGEISALTAKLSDLRRHGKGDARALAKQ |
5 | 4gmxC | 0.11 | 0.09 | 3.34 | 0.71 | CNFpred | | --DAEVLNCMTTVVEKVGHMIPQGVILILQSVF----ECTLDMIN-YPEHRVEFYKLL-----KVINEKSFAAFLEL--PPAAFKLFVDAICWAFKH-----NNRDVEVNGLQIALDLVKNIEANEFHKNYFFIFVSETFFV |
6 | 2j5cB2 | 0.09 | 0.05 | 1.89 | 0.49 | HHsearch-2 | | RIVECYYWTTGVVERRQHGYERIMLTKINALV----------------TTIDDVFDIYGSKYFVEVSANLARMAQWIESQHSLVNKMLRDLLHRYE---------------------------------------------- |
7 | 5xuaA | 0.06 | 0.06 | 2.69 | 0.84 | Neff-PPAS | | MQEPLTKERLISDWNSNVSVAVARTTAIAKSSDASLVQFLAADAAATTKSTANVLKQIEPLITQ---PAEREILDKIMQVRKTYIASRDKVSQLKADGMAEEAESTLINSYVPAAQGYLKLLGELLNLQRASLDAKAAEVEQ |
8 | 2pt7G2 | 0.15 | 0.07 | 2.38 | 0.55 | HHsearch | | TFLQNQEKVMDTQLQSVIMTVH----EVGKGQMKAPDG-V--LTYIALKKL---RKAFPNKYVS--I-----KTNLND---EKY---I--VIN------------------------------------------------- |
9 | 4tqlA1 | 0.04 | 0.04 | 2.13 | 0.61 | SP3 | | QELEKARDRMEKLYKEMVELIQKAIELMRKIFQEVKQEVEKAIEEKLLEKLKQIMQEAKQ-KMEKLLKQLKEEMKMKEKMEKLLKEMKQRMEEVKKKMDDELLEKIKKNIDDLKKIAEDLIKKAEENIKEAKKIAEQLVKRA |
10 | 5h7cA2 | 0.07 | 0.07 | 2.85 | 0.67 | PROSPECTOR2 | | TDKEEVIEIVKELAELASELVNEIVKQLAEVAKEATDKELVIYIV---KILAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSEL----VNEIVKQLEEVAKEATDKELVEHIEKILEELKKQS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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