>PF18752 (316 residues) FDSNEKVRNDLHKYIMAHTEGVKDMRHGQYAFAFYGSLGAQGGAFPLNRFTSLDLTAQGT SYYVCDINDFRYFKEKEEIIVKNPINYNIIREETNQPPIVAAPITVLQTMSKLTTSPYHS ESVIIKSLGYFTDPNYPKPKLVYQPIRYLYTQYHPCSVCTTKIMNSSFVNDMTNDNIRIR NLNGLGAMLPSTPPPTTPIAYKINSEESVTNLLLPSDTSKERLYLSFSRQWDIDYCHYIN IRKLAAKPGIQVVSAATNRYGDRHVGYQSTLVTELERSSMIDTRRPDGSIVSELFTFPTT FKSRESNWQYLINQAF |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | FDSNEKVRNDLHKYIMAHTEGVKDMRHGQYAFAFYGSLGAQGGAFPLNRFTSLDLTAQGTSYYVCDINDFRYFKEKEEIIVKNPINYNIIREETNQPPIVAAPITVLQTMSKLTTSPYHSESVIIKSLGYFTDPNYPKPKLVYQPIRYLYTQYHPCSVCTTKIMNSSFVNDMTNDNIRIRNLNGLGAMLPSTPPPTTPIAYKINSEESVTNLLLPSDTSKERLYLSFSRQWDIDYCHYINIRKLAAKPGIQVVSAATNRYGDRHVGYQSTLVTELERSSMIDTRRPDGSIVSELFTFPTTFKSRESNWQYLINQAF | |||||||||||||||||||
1 | 2pffB | 0.19 | 0.18 | 5.73 | 1.12 | HHsearch-2 | LEHVLLVPTASFF-IASQLQEQFNLPEPTEGFAALGYVSSLVEPSKVGQFDNLCLTEFENCYITARIMAKRPFDKKSNSALGNAQLVAIFGGQGNTDDYFEELRDLYQTLSELIRTTLAEKVFGLNILEWLENPSN-TPDKDYLSIPTAKLLGFTPGELRSYLKGASFFVSVKAITLFFIGVRCYEAYPNTSLPP------SI-LEDSLENNE-----GVPSPMLSISNLTQEQVQDYVNKSHLPA--GKQVEISLVNGAKNLVVPPQSLYGLLTLRKAKAQSRIPFSEPVASPFHSHLLVPASDLINKDLVKNNF | |||||||||||||
2 | 5njlA | 0.07 | 0.06 | 2.47 | 1.11 | PROSPECTOR2 | KKEATELVSKVRDLMSQKYTGGSQVGQPIYEIKVGETLSKLKIITNIDELEKLVNALGENKELIV------TITDKGHITNSANEVVAEATEKYENS---ADLSAEANSITEKAKTETNGIYKVADVKASYDSAKDKL-------VITLRDKTDTVTSKTIEIGIGD------------EKIDLTANPVDSTGTNLDPSTEGFRVNKIVKLGVAGAKNIDDVQLAEIT--IKNSDLNTVSPQDLYDGYRL------------------TVKGNMVANGSDISSKDSETGKYKFTIKYTDASGTNEKDLKDAKAALE | |||||||||||||
3 | 4r04A | 0.12 | 0.11 | 4.00 | 0.64 | SPARKS-K | LSNTIEKINTLGAYNYTDESNNKYFKTSQKSIIHYKKYNDSTLEFNSKDF-------IAEDINVFMKDDINTITGKYYVNTDKSIDFSISLVSKNQVKVNGVYSSYLDFVKNSDTSNFMNDNISFWKLF-----GFENINFVIDKYFTLVGKTYVEFICDNNKNIDIYFGEWKTSSSKSTIFSGNGPIYNPDTGEDISTSLDFSYEPYINKVLIAPDLYTSLININTNYYSNEYYPEVLNPNTFHKKVNINLD-SSSFEYKWSTEGSQKIRIKGILSNTQSFN--------KMSIDFK---DIKKLSLGYIMSNFK | |||||||||||||
4 | 2qagC | 0.11 | 0.07 | 2.66 | 0.49 | FFAS-3D | -----------------NQVYRKSVKGFEFTLMVVGE-SGLGKSTLINSLFLTDLYSPEYP-----------GPSTVQVEQSKVLQLLLTIVDTPWQPVIDYIDSKFEDYLNAESRNRRQMPDNVQCCLYFIAPGHGLKPLDIEFMKRLHEKVNIIPLIAADTLTPEECQQFKKQIMKEIQEHKIKIYEFP------------LPLAVVGGRQYPWGVAE-----------VGEHCDFTILRNMLIRTHMQDLKDVTNN-----VHYENYRSRKL----------------------------------------- | |||||||||||||
5 | 2pffB | 0.13 | 0.09 | 3.20 | 0.52 | HHpred | -------------------------------------------AYS-TRPLTLSHGSLEHVLLVPTA----SFFIASQLQEQFNILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ-ENDTTLVKTKELI----KNYITARIMA-----KRPF----DK---KSNSALFRAV---GEGN-AQLVA-IFGGQGNTDFEELRDLYQTYH-----VLVGDL-----I--KFSAETLSELIRTEKVFTENPSNTPDKDYL---LSI-PISCPLIGVIQLA- | |||||||||||||
6 | 3txaA1 | 0.10 | 0.09 | 3.43 | 0.61 | MUSTER | SQRALKAGEAVEKLIDK--TSNKDNRVALVTYIFDGTEATVSKGVADQNGKALNDSVSWDYHKTTFTATTHNYSYLNLTNDANEVRIPKEAEHINGDRTLYQTQKALMKANEILETQSSNARK--KLIFHVTMSYAINFNPYISTSYQNQFNSFLNKIPDRSGILQEDFIINGDDYQIVKGDGESFKLFSDRKVPVTQAAYRVPQNQLSVMSNEGYAINSGYIYLYWRDYNWVDPKHGEPTTLYFNGKGYDIFTVGIGVNGDPGAT-PLEAEKFMQSIS----SKTE------NYTNVDDTNKIYDELNKYFKTIV | |||||||||||||
7 | 1vpkA | 0.08 | 0.06 | 2.33 | 0.75 | CNFpred | EVDTSLLEEMVEKVIFAAAK--DEFMRNLNGVFWELHK---------------------NLLRLVASDGFRLALAEEQIENEEEASFLLS----------LKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTN-----------DVETVMRVV-ETFKTKVVVSRKELRESLKRVMVIASK-------------GSESVKFEIEE---------------NVMRLVSKSPDYGEVVDEVEVQKE--GEDLVIAFNP---------KFIEDVLKHIETEIEMNFVD---STSPCQINPLD-----ISGYLYIVMPIR | |||||||||||||
8 | 2pffB | 0.15 | 0.13 | 4.50 | 0.80 | HHsearch-2 | VKTKELIKNYITARIMAKRPFDKKSRNAQLV-AIFGGQDYFEQGLNILEWLENPSNTPDKDYLLSILIQLAHYVVTAKLLGTPGELRSYLKG----ATGHSQGLVTAVAIADSWESFFVSVRKAITVLFFIGVCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKSLVNGAKNLVVSGPP---------QSLYGLNLTLRKAK-APSGL-----DQSRIP----FSERKLKFNRFLPV---ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFRVLSGS-ISERIVDCIIDYGF | |||||||||||||
9 | 3txaA1 | 0.08 | 0.08 | 3.09 | 0.80 | Neff-PPAS | -QRALKAGEAVEKLIDKITS-NKDNRVALVTYASTIFDGTEATVSKGKALNDSVSWDYHKTTFTATTHNYSYLNLTNDANEVNILKSRIPKEAEHINGTQKALMKANEILETQSSFNPYISTSYQNQFNSFLNKIPDRSGILQEDFIIDYQIVKGDGESFKLFSDRKVPVTGGTTQAAYRVPQNQLSVMSNEGYAINSGYIYLYWRDYNWVYPFDPKTKKVSAT---KQIKTHGEPTTLYFNGNIRPKGYDIFTVGIGVNGDPGATPLEAEKFMQSISS-----KTE------NYTNVDDTNKIYDELNKYFKTIV | |||||||||||||
10 | 1vt4I3 | 0.10 | 0.07 | 2.72 | 0.75 | HHsearch | -------------------------------------------EYALHRIVD-------------HYNIPKTFDSDDLIPPLDQYFYHIGHHLKNIEHPERVFLDFRFLEQKIRHDAWNASGSILNTLQFYICDNDPKYERLVNAILDFLPKIEENLICSKYT-DLLRIALMAEDEAIFEEHVQRGGGGGGGGGGGGGG--GGGGGGGGGGGGGGGGGGGGGGGG---GG-GGGGGGGGGG----GGGGGGG-GGGGGGGGGGGGGGGGG-----GGGGGGGG--GGGGGGGGGGG-GGGGGGGGGGGGGGGGGG- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |