>PF18296 (250 residues) RDVAYIVVCPENEALLEGAKTFFRDLSAVYEMCRLGQHKPICKVLRDGIMRVGKTVAQKL AEELVSEWFNQPWGSEESDNHSRLKLYAQVCRHHLGFSGSVGAQNPSAGASSAERTQGNI GCGGDTEPGQSSSQPSQDGQESVTERERIGIPTEPDSADSQAYPPAVVIYMVDPFTYTAE EDSTSGNFWLLSLMRCYTEMLDNLPEHMRNSFILQIVPCQYMLQTMKDEQVFYIQYLKSM AFSVYCQCRR |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | RDVAYIVVCPENEALLEGAKTFFRDLSAVYEMCRLGQHKPICKVLRDGIMRVGKTVAQKLAEELVSEWFNQPWGSEESDNHSRLKLYAQVCRHHLGFSGSVGAQNPSAGASSAERTQGNIGCGGDTEPGQSSSQPSQDGQESVTERERIGIPTEPDSADSQAYPPAVVIYMVDPFTYTAEEDSTSGNFWLLSLMRCYTEMLDNLPEHMRNSFILQIVPCQYMLQTMKDEQVFYIQYLKSMAFSVYCQCRR | |||||||||||||||||||
1 | 3n2nF | 0.10 | 0.07 | 2.49 | 0.64 | SPARKS-K | GGFDLYFILDKSGSVLHHWNEIYYFVEQLAHKF-------ISPQLRMSFIVFSTRGTEDREQRQGLEELQKVLPGGDTYMHEGFERASEQIYYENR---------------------------------------------------------------QGYRTASVIIALTD-----GELHE----DLFFYSEREANRSRDL-------GAIVYAVGVTQLARIADSKVFPGFQALQGIIHSILKKSC- | |||||||||||||
2 | 5awhA2 | 0.11 | 0.06 | 2.32 | 0.70 | FFAS-3D | RSPRILVVYP--SSTQGKVENFLSAFRD--------GMGSNYSGFSKGFVDLMGLTKVEFVMCPV-----EVSSADRNGAHTKYNSAIEDKLAG------------------------------------------------------------------AGEVHAGIVVLFEDHARLPDDRN---------PYIHTKSLLLTL------GVPTQQVRMPTV----LLEPKSLQYTLQNFSIATYAKL-- | |||||||||||||
3 | 2pffB | 0.14 | 0.10 | 3.44 | 0.52 | HHpred | ---LAAKLLQENDTTLV----KTKELIKNYITARIMAKRPFDKKSNSLFRAVGEGNAQLVGQGNTDDYFEELRDYYHVLVGDLIKFSAETLSELIRTTL------------------DA--------------------------------------EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCVIQLAHYVVTAKLLTPELKGAHSQGLVTAVAIAETDSW-ESFFVSVRKAITFIGV-RCYE | |||||||||||||
4 | 1p60A | 0.08 | 0.07 | 2.84 | 0.67 | MUSTER | TRIKKISIENI-STFVNILKQLCEDWEVVPEPV--ARWCNVQSTQD-------EFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWT------IYQDWHDWMNNQFGQSLELDGIIYLQATPETGRNEEQGIPLEYLEKLHYKHESWLLHTNFDYLQEVPILTLD-------VNEDFKDKYESLVEKVKEFLSTL-- | |||||||||||||
5 | 1h78A | 0.08 | 0.06 | 2.21 | 0.71 | CNFpred | --PFTNCCLVDLKGMLESIGVATAIMAQITAQVA--------SHQYGGTTFANDKVLSPYVKRTYAKHIEDAEKWQIADALNYAQKTEKDVYDAFQAYEYEVNTLFSSN------------------------------------------------------TPFVTITFGTG-------TDWTERMIQKAILKNRIKGLGRDGITPIFPKLVMFVEEGVNLYKDD-----PNYDIKQLALECASKRMY | |||||||||||||
6 | 2pffB | 0.14 | 0.13 | 4.50 | 0.99 | HHsearch-2 | NDILAAKLLQENDTTLV----KTKELIKNYITARIMAKRPFDKKSNSLFRAVGEGNAQLVGQGNTDDYFEELRDYYHVLVGDLIKFSAETLSELIRTTLDQEWLNPSNTPLSTPGYLKATTDSWEYEAYPNTSLPPEGVPSPMLS--ISNLTQEQDYSHLP-AGKQVEISLVNGAKNLVVSGPP---QSLYGL---NLTLRKAKAPSGLDQSR---IPFSEVASPFHSHLVPASDLINKDLVNVSFNAKD | |||||||||||||
7 | 5cwpA | 0.10 | 0.08 | 3.10 | 0.74 | Neff-PPAS | ----------DEEEARELIERAKEAAERAQEAAERTG---------DPRVRELARELKRLAQEAAEEVKRDPSSSDVNEALKLIVEAIEAAVRALEAAERTGDPEVRELARELVRLAVEAAEEVQRN------------------------PSSSDVNEALKLIVEAIEAAVRALEAAERTGDPEVRELARELVRLAVEAAEEVQRNPSSEEVNEALKVESLREAEESGDPEKREKARERVREAVERAEE | |||||||||||||
8 | 2pffB | 0.14 | 0.10 | 3.56 | 1.02 | HHsearch | NDILAAKLLQENDTTLV----KTKELIKNYITARIMAKRPFDKKSNSLFRAVGEGNAQLVGQGNTDDYFEELRDYYHVLVGDLIKFSAETLSELIRTTL------------------DA--------------------------------------EKVFTQGLNILEWLENPSNTPDKDIPISCPLIGVIQLAHYVVTAKLLTPGLKGAHSQGLVTAVAIAETDSW-ESFFVSVRKAIFFIGV-RCY- | |||||||||||||
9 | 1jvrA | 0.07 | 0.04 | 1.63 | 0.69 | SP3 | -------------------------------------HMGQIHGLSPTPIPKAPRGLSTHHWLNFLQAAYRLQPGPSDFDFQQLRRFLKLALKT--PIWLNPIDYSLLASLIPKGYPGRVVEIINILVKNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPP--------PYVEPTTTQCF------------------------------------------------------------------ | |||||||||||||
10 | 1pc3A | 0.08 | 0.08 | 2.96 | 0.87 | PROSPECTOR2 | PVTLAETGSTLLYPLFNLWGPAFHESGAGIAQAAAGTDAYLSEGDHKGLMNIGVSEHLKLNGKVLAAMYQGTIKTWDDPQIAALFLFTQYLSKQDPEGWGKSPGFGTTVDFPAVPGALGENNSSGNFLLPDAQSIQAAAAGFASKTPANQAISMIDGPAPDGYPIINYEYAI----VNNRQKDAATAQTLQAFLHWAITDGNK----------------ASFLDQVHFQPLP--PAVVKLSDALIATISS | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |