>PF17720 (324 residues) MRRLGSVQRKMPCVFVTEVKEEPSAKREHQPFKVLATETINHKALDADIYSAVPTEKVDG TCCYVTTYKGQPYLWARLDRKPNKQAEKRFKKFLYSKENSKEFFWNVEEDFKPVPECWIP AKEIEQLDGKPVPDENGHIPGWVPVEKNNKQYCWHSSVVNYEFDIALVLKHHPDDPGLLE ISAVPLSDLLEQTLELIGTNINGNPYGLGSKKHPLHLLIPHGAFHIRNLPTLKHNDLLSW FESCREGKIEGIVWHCNDGCLIKVHRHHLGLHWPIPDTFMNSKPVIINMDLNKYDYAFDS KCLFSYFSKIDNQKFSRLKDIMFD |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MRRLGSVQRKMPCVFVTEVKEEPSAKREHQPFKVLATETINHKALDADIYSAVPTEKVDGTCCYVTTYKGQPYLWARLDRKPNKQAEKRFKKFLYSKENSKEFFWNVEEDFKPVPECWIPAKEIEQLDGKPVPDENGHIPGWVPVEKNNKQYCWHSSVVNYEFDIALVLKHHPDDPGLLEISAVPLSDLLEQTLELIGTNINGNPYGLGSKKHPLHLLIPHGAFHIRNLPTLKHNDLLSWFESCREGKIEGIVWHCNDGCLIKVHRHHLGLHWPIPDTFMNSKPVIINMDLNKYDYAFDSKCLFSYFSKIDNQKFSRLKDIMFD | |||||||||||||||||||
1 | 5cotA | 0.17 | 0.09 | 3.03 | 1.52 | HHsearch-2 | TNLSGEILGEFPT-FISKTDQER-----VQNL---------IPQIEEKGQKFEVTVKLDGSSMTVYRKDDHIGVCGRNWEL------------------------------R--------------------ETA------------TN---AQWHAARRNKMI------------EG-------LQFLNRLQGEIIGESIQGNLEKL-----KGQDFYLFDIYDIDKELNHTAEQILAMADGPKNVKREGLVFKRLDGFSFKAISNAYLEKHKDR------------------------------------------------ | |||||||||||||
2 | 3cnfT | 0.08 | 0.08 | 3.04 | 1.14 | Neff-PPAS | --RLLGPFQYFNFSETDRGHPLFRLPLKYPS------KAIPADELIDNLHSWMRSVHLLHV---RSEDNTLRYNWMLGVYARSTNYTTPVGQLVVNAPAINSVFVALGIDYIDIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSSWHWDVLHTFHYRSESDMIDHFAAKILEDWRQKEKLDKGALVEADRVVQRLIPLSSSTYVQRLAAIRLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNILLYPYTYIFTTAYTSMNYTGQGRIKHSLAVTGTTEHTIADIT-- | |||||||||||||
3 | 5cotA2 | 0.16 | 0.08 | 2.78 | 1.56 | HHsearch | TNLSGEILGEFPTFISK-TDQE----R--------VQ-NL-IPQIENKGQKFEVTVKLDGSSMTVYRKDDHIGVCGRNWELRETA-TNA-------------------------------------------------QWHAAR------RNK-MIEGLQ---------------------------FLNNLQGEIIGESIQGNLEKL-----KGQDFYLFDIYDIDPELNHTAEQILAMADGLNNVKREGLVFKRLDGKSFKAISNAYLEKHKDR------------------------------------------------ | |||||||||||||
4 | 4on1A | 0.09 | 0.07 | 2.83 | 0.75 | SPARKS-K | EDLAGVLSKISNTEHTIMLQEGS----ELWTTSIKAIHGV--EIEELFEGDSINAILSQSYATIRLQRGGDLIDYIVYK---DKERMAEIANYYQNHYL-DKIVVCNTGDIKNIRIDITKAIGNNPFKGLPIKDPATLEFMLIKEKDGG--SLEHDITSQIQAVTTSLKFLIDSGFITVKYTIKDSSHKGG-----------------------------------ASDYEVSLESFQNYLRSWDEKKPYILLRDWDSGKTFGYAS-GIGVIHLN-NPRGNFEVAAISTTSSSH-----PYTLAHEIGHLLGEHVDNEQDLMYT | |||||||||||||
5 | 5cotA2 | 0.17 | 0.09 | 2.93 | 0.67 | FFAS-3D | ----GEILGEFP-TFISKTDQER-------------VQNLIPQIEENKGQKFEVTVKLDGSSMTVYRKDDHIGVCGRNWELRETATNAQWHAARRNK---------------------------------------------------------MIEG---------------------------LQFLNRNLAEIIGESIQGNLEKLKGQDFYLFDIYDIDKAQYLTELNHTAEQILAMADGNKNVKREGLVFKRLDGKSFKAISNAY------------------------------------------------------- | |||||||||||||
6 | 2hvrA | 0.14 | 0.09 | 2.96 | 0.70 | HHpred | ---MFKKYSSLENHYNSKFI-----------------EKLYLG---LTGGEWVAREKIHGTNFSLIIERDKVTCAKRTGPILP-------------------------------AE---------------------DFFGYEIIL---KN---YADSIKAVQD---IMETS--AVV--SY---------QVFGEFAGPGIQKN-VDYG----D-KDFYVFDIIVTTESTYVDDYMMESFCNTGEVFTAEGYVLKPCYRVAIKCKNSKFELSE---------------ADNKLVACYVTLNRVNNVISKIGEIGPKDFGKVM-- | |||||||||||||
7 | 4ykeA1 | 0.13 | 0.10 | 3.63 | 0.62 | MUSTER | -------------------------TAGPDTIRILVS-GYEERDPIRKDDSWRTFDEI-----LARTKDVDMVLLG-FHDKPSRKAMYQVMRSLRKNCLGMK--PCELEFLSDPAEVF---EGAFPHVNYYDPDINVSIP-VFSIPSGDGHLCSLDLLQVAGL---VNYFGRVPEADNIHVKPILL-QKGKTKLALYG--MSNVRDEYRPTGDWFNLLTLHQNHYAHTPTGYLSENML-------PDFLDLVIWH-----------EHECLIDPKKNPE-TGFHVMQSSIATSLVPGEAVPKHIAILS-ITGKSF-EVEKIPLR | |||||||||||||
8 | 5couA | 0.17 | 0.07 | 2.34 | 0.84 | CNFpred | ----------------------------------------------------EVTVMLDGSSMTVYRKDDHIGVCGRN--------------------------------------------------------------WELRET----ATNAQWHAAR-RNKMIEGLQFL---NRNLALQ-----------GEIIGESIQGNLEKLK----GQDFYLFDIYFTVKHVP-HTAEQILAMADGPSNVKREGLVFKRLDKFSFKAISNAYLEKHKDR------------------------------------------------ | |||||||||||||
9 | 5cotA2 | 0.15 | 0.08 | 2.79 | 1.25 | HHsearch-2 | TNLSGEILGEFPTFIS-KTDQE----R--------VQ-N-LIPQIEEKGQKFEVTVKLDGSSMTVYRKDDHIGVCGRNWELRETA-TNAQWHAARRN--------KMIEGLQFLNRNLAL------------------------------------------------------------------------QGEIIGESIQGNLEKL-----KGQDFYLFDIYDIDPELNHTAEQILAMADGSNNVKREGLVFKRLDGKSFKAISNAYLEKHKDR------------------------------------------------ | |||||||||||||
10 | 3cm9S1 | 0.07 | 0.06 | 2.73 | 1.01 | Neff-PPAS | ---PPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTRIRLDIQGTGQLLFSVVINQDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFE-----GRILLNPQDKDGVITGLRKEDAGFVNEESTIPRSPTVVKGVAGSSLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDS | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |