Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | MGEKSQWKGPAPRRADGKLGRMSDHPYAPWGFTPSSRAPTAWVGPPCPVWASRPQEHSPEPRRARRPPTLRAQAALCAPALRLRDHLDHFSILMTSCTSWLQAPQAPGLCRDEQLSGAPILLPDLEGTKLNNFQESSPLPHKHERKDKRGTPEEKGRSAPEKIIQSLKCPGGHRPASLSSGCPASYRLSFNLPPSMLLSVQKCCMPSSLKTC |
1 | 2blmA | 0.09 | 0.08 | 3.28 | 1.04 | SPARKS-K | | EQFDAKLGIFALDTGTNRVAYRPDERFAFASTIQQKSIEDLNQRITYTRDDLVNYNPITEKHVDTGMTLKELADASLRAQNLILKQIGGPESLKKELRKITNPERFEPLNEVNPGETQDTSTARALVTSLRAFALEDKLPSEKRELLIDWMKRNTTGD---ALIRAGVPDGWEVADKTGAASYGTRNDIAIIWPPVVLAVLSSRDKKDAKYD |
2 | 4k0mC | 0.07 | 0.05 | 2.19 | 1.11 | PROSPECTOR2 | | KVYTDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAA---------------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-----------AAAAAAA |
3 | 5aftV | 0.07 | 0.06 | 2.30 | 0.96 | SPARKS-K | | ---SGNKVSRQSVLCGSQNIVLNGKTIIMNDCIIRGDLANVRVGRHCVVKSRSVIRPPFKKFSKGVAFFPLHIGDHVFIE---EDCVVNAAQIGSYVHVGKNCVIGRRC---VLKDCCKIL----DNTVLPPETVVPPVFSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLTQV------------------------------------ |
4 | 5myjBF | 0.11 | 0.08 | 2.91 | 0.45 | FFAS-3D | | --RASLRQGTHAHKNRSAVSGGGKKPWRQKG------TGRARQGTRSPQWRGGGTVFGPNPRSYAYKLPQKVRQLALKSVYSTKVTDGKLIAVDTLDFAAPKTAEFAKVISALSIERKVLVVLP-NEGNEFAELSARNLENVKVTTANSASVLDIVQSALTQIEEVL--------------------------------------------- |
5 | 1xcrA | 0.20 | 0.07 | 2.26 | 0.35 | HHpred | | -------------------------------------------------------------EFSFHVPSLEELAGVMQKG--LKDNFADVQVSVVDCPDLTKEPPVKGICGKTRVGGVPYLLPLVNQKKVYDLNKIAK-------------------------------------------------------------------------- |
6 | 2ic4A | 0.15 | 0.12 | 4.12 | 0.61 | MUSTER | | -GTLKP---DYPDIKHGGL--YHENMRRPFPVAVGKYYDEHFETPSGSYWDHIHTQDSPAVPLRKCYFPYLENGYNQNY----GRKFVQGKSIDVACHPALPKAQTTVTCMENGWSPTPRCIRVKTCSKS-----SIDIENGFISESQYTYAL--KEKA------KYQCKLGYV---TADGETSG-------------SIT--CGKSAQPTC |
7 | 3ohtA | 0.22 | 0.07 | 2.09 | 0.33 | CNFpred | | -----------------------------------------------------------------------IHAKRTYRELRLLKHMKHENVIGL--LDVFTPATSLEEFN------DVYLVTHLMGADLNNIVKCQKLTDDHV-------------------------------------------------------------------- |
8 | 5a1uG9 | 0.21 | 0.02 | 0.60 | 0.62 | HHsearch-2 | | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PGLLMTIIRFVLPLQDHTI |
9 | 6e5p2 | 0.16 | 0.14 | 4.72 | 0.95 | Neff-PPAS | | ---VESGGGLVKAGGSLILNFRISAHTMNWVRRVPGGGLE-WVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVEDTA------IYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAP------------SSKSTSGGTAPEPVTVSWNSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNKPSNTKV |
10 | 5hccD | 0.24 | 0.05 | 1.62 | 0.33 | HHsearch | | --------------------------------------------------------------------------------------------------------------------------------------------------------------CEEVIHRKL----NHLGERVTSGCPTGCLCVIREPDNVDNANGTCYA---LMS- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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