Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | GVGVAGCNRGHRHWVPSQLQPSEIKAGVSLAVVTDFAWILAPRPKRATASALGTESPRFLDRPDFFDYPDSDQARLLAVAQFIGEKPIMFVNSGSSPGLFHHILVGFLVVVVFFLLFQFCTHINFQKGA |
1 | 5yysA3 | 0.12 | 0.12 | 4.14 | 0.75 | SPARKS-K | | YSDQIVWGAGGWTDTPPYSLYSGGNVVNLAIPPLQVYVKPCKDFHIVLRSIDMGAMEIVSTFDELQDYIGSPFSIPKAALSLAGFAPEVTLLAAAGSGLTSSILASTVLGAINDFICQRTLVLEQLLTT |
2 | 1i96R | 0.11 | 0.06 | 2.22 | 0.49 | FFAS-3D | | ----------------------------------------KPKKEAQRRPSRKAKVKATLGEFDLRDYRNVE-----VLKRFLSETGKILPRRRTGLSGKEQRILAKTIKRARIL-------------- |
3 | 3tw5A | 0.16 | 0.11 | 3.60 | 0.31 | HHpred | | ------SCSIRTGKTSGYCIPT--WFGISHAWSPAAILE--TEPKCPVKH----------NGVTF---QPMDLKALVSLVYDGARVQTVFTG-DLNPAYFHIASANILGK------------------- |
4 | 6barA2 | 0.30 | 0.22 | 6.82 | 0.89 | MUSTER | | VVGRE--INGARAWFPLQFQPLE---LAKLGLLLALAKALEGRP---IARVWDYALPALLTLP-LLLQPDLGGALVVLFGVFV----VVFVRGLP----WRHLLVGLFALALLV--------------- |
5 | 2wtbA | 0.17 | 0.07 | 2.30 | 0.60 | CNFpred | | ------------------------------------------------------------------------IVDLLDVGKKIKKTPVVVGNC---TGFAVNRMFFPYTQAAMFLVECGADPYLIDRAI |
6 | 2pffB | 0.13 | 0.13 | 4.53 | 0.40 | HHsearch-2 | | KSNSALFFGGQGNTDDYFEELLYQTYHVLVGDLIKFSAETLSELDAEKVFTQGLNILEWLENPSDKDYLLSIPISCVVTAKLLGFTPGELRETDSWESFFVSVRKAITVLFF--IGV-RCYEAYPNTSL |
7 | 3cwrA2 | 0.07 | 0.06 | 2.56 | 0.59 | Neff-PPAS | | ---ESWIAPIFPGFEADPQDAAAALERIVYDIAQAVLSREAVSLFRLASDADLRNRFLPAYNANGIERSRRELARWLDQQASAGR-----LPLPIPAERVADLLLSAVIAEPLRQITLG-------LRE |
8 | 3k35F1 | 0.18 | 0.10 | 3.27 | 0.47 | HHsearch | | -------------------------------------------------------DKGKCGLPEIFDPPEELERKVWELARLVWSSVVFHTGAGISTTQTHMALVQLE-RVGLRLLHVR-SGFDWEDS- |
9 | 3keoA2 | 0.12 | 0.12 | 4.10 | 0.62 | SP3 | | NVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLDSDIEILTVPSTEAQEVADILVKAG-IKGILSFSPVHLTLPKDIIVQY--VDLTSELQTLLYFMNQQR-- |
10 | 3k1qD1 | 0.08 | 0.08 | 3.02 | 0.49 | PROSPECTOR2 | | MAQR---QFFGLTYNFYGQPAPLFDLNDLQELAGCYA---RPWTSRFSHLAISTGSLPVWSAR----YPSVASRNIVVNTLLGDPVLSSLAPVPAIQPPSNNYPTYVLNLSSMWPINQDVHIMTMWALS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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