Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | LPFEVAVSVIQKFIFDIPSVLTGKISPMQCVLRCATNLVFELNLNLAIAKIIGPSDTLKKDMFNRTVSSLISSAFLDRFTFSPETFIRLSTVVPMVVRKLLVSFF |
1 | 3nxcA2 | 0.11 | 0.10 | 3.78 | 0.74 | SPARKS-K | | -----IEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFGERNPGLTRILTGHQGRINQLFERIEAQLRQVLREKGYATDETLLASILAFCEGMLSRFVRSEF |
2 | 4krcB | 0.15 | 0.14 | 4.84 | 0.78 | FFAS-3D | | ISVDEALANFKETIELLLKLSKPTLSSADFLKRIQDKCVYLVATFLIDTLFLNLQEKEVHRMII--AAVRLSTKLLEDFVHSHEYFSKVCGILTKLEVSLLICVC |
3 | 5b86A1 | 0.13 | 0.07 | 2.32 | 0.26 | HHpred | | -VVRTAESYHYHFASHLCALAQFELCERDTY------LLLLWVQNLYPNDILNSPKLAQELQ------------------------------------------- |
4 | 5cwmA1 | 0.16 | 0.15 | 5.10 | 0.82 | MUSTER | | KRVEKLVKEAEELLRQAKE--KGSEEDLEKALRTAEEAAREAKKVLEQAEKEGDPEVRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAE |
5 | 4c0pA | 0.13 | 0.13 | 4.60 | 0.61 | CNFpred | | DTVDDLFRLATRFIQRSPVTLLRSQVVIPILQWAIASTTLNCSVMRFLRDLIHTRKELIGQVMNQLGQQLVSQLLHTCFCLPPYTLPDVAEVLWEIMQVDRPTFC |
6 | 3feyA1 | 0.12 | 0.11 | 4.02 | 0.54 | HHsearch-2 | | NKIPLNYHIVEVIFAELFQLPAPPH-IDVM----YTTLLIELCKLQSLPQVLARLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQSPK--PKFVREVL |
7 | 5cwbA2 | 0.13 | 0.12 | 4.29 | 0.80 | Neff-PPAS | | -SYEVICECVARIVAEIVEALKRSGTSEDEIAEIVARVISEVIRTLKESG---SSYEVIKECVQRIVEEIVEALKRSGTS--EDEINEIVRRVKSEVERTLKESG |
8 | 5fo3A | 0.18 | 0.13 | 4.33 | 0.58 | HHsearch | | FCVDDA-ALYFSFEEKCRDF---NLSKEQ---------KAELVLNALVAIRYLKPQ-PKSWHFVS--------HG--EWVP-PGDAACVWLSHQVNL--LVVES- |
9 | 2r91A1 | 0.07 | 0.07 | 2.80 | 0.71 | SP3 | | LSLQEKMELTDAATSAARRVIVQVASLNADEAIALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPGRDVDARAAKELGCIRLAHTLAYKRYLA |
10 | 5cwmA1 | 0.15 | 0.15 | 5.11 | 0.60 | PROSPECTOR2 | | DPEDELKRVEKLVKEAEELLRQGSEEDLEKALRTAEEAAREAKKVLEQAEKEGDPEVALRELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAG |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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