Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | MKAKSLTLISITVMFFLFLIYSFNDLFFYSEVKYGDIHEHLDLRMQGIRFSLSHYIIDDKSQLVISEGIYGIGLKMPTGKYYLFPLHSYQSSPDNMARGSLNSLASPLSLYVYEIHNKKNNVVTFFNGDRGFIDVNGETIHLSSLFLGVQGEHIHTSYHDVS |
1 | 2v42A1 | 0.11 | 0.10 | 3.80 | 0.71 | SPARKS-K | | -----ATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDRPLAQLLQMDGPRREVVQRGNEISYFEPEPFTLNLPSLIYTDFKRLSPYYDFISVGLCEVIRVVARDGTRYSYIVWMDTESKLLDRDGEQFRVIAFNVNQDISSSMANLPPLL |
2 | 6mitC | 0.15 | 0.14 | 4.78 | 0.73 | FFAS-3D | | MSKTRRWVIILLSLVALILIGVNLDPTYKSVVYSPEGALNYRLIAQHVEYFPVMTTFDKDKVPTWSIKSDRAKLTNDRMLYLYGHVEVNALTADSQ--------LRKITTDNAQINLVTQDVTSTLYGTTFNSSGLRMRGNLRSKNAELIEK-VRTSYEIQN |
3 | 5kevB | 0.12 | 0.08 | 2.85 | 0.26 | HHpred | | ---------------------VHFETSYKYQAADSTHDVAINVSIKGNHFTSDIIIRELVKKNYYNVIGHGDIIQKNTHQYYLNFDIDTNKYTSISSLINK-----SNNIRVVYL---SEEYVVVEFFFYD-----GQIITLHR------------------ |
4 | 6mitC | 0.13 | 0.12 | 4.27 | 0.72 | MUSTER | | MSKTRRWVIILLSLVALILIGVNLDPTYKSD---HSDTVVYS---EGYRLIAQHVEYFSDDGISWFTQPVMTTFDKDKVPTWSIKSDRAKLTNDRM-YGALTADSQLRKITTDNAQ-LVTQDVTS---DLVTLYGTTFNSSGLRMRGNLRSKKVRTSYEIQN |
5 | 4r04A | 0.12 | 0.09 | 3.06 | 0.75 | CNFpred | | ------NYLISNLSNTIEKINTLG-KNIAYNYTDENNKYFGAISKT-SQKSIIHYKKDSKNILEFYNDSLEFNSKD-AEDINVFMKDD-----------------INTITGKYYVDNNTDKSIDFSI----SLVS-KNQVKVNGLYLNE------------- |
6 | 1xtdA | 0.11 | 0.08 | 2.90 | 0.51 | HHsearch-2 | | -NASKTYPA-A---------GALKKGGYV---CINGPCKVIDLSVKHGHAKVSIVATTHNVEVPFVKTFTYSVLDIQNSHLSL-DD-EGESREDL--DPPDAALATQI--KEQFDSG-KEVLVVVVSGTEQVLQTKNAA----------------------- |
7 | 5kevB | 0.18 | 0.13 | 4.20 | 0.72 | Neff-PPAS | | ------------------------VHFYETSYKYQAHDVAINVSIKGNHFTSDIIIRESENKNYYNVIGHGDIIQKNTHQYYLNFDNIDVYTGTNKEPTSISSLINKSNNIRVVYLSEEYVVVEFFFYDGQIITLHRY------------------------ |
8 | 5nfiB1 | 0.09 | 0.06 | 2.35 | 0.42 | HHsearch | | ----------------------CPGVYVNF-YSQTEANP----SYPAEVARLNVYAFDKDGILRSANVFEDVLIPEKDGLYTIFAWGNIDDYNEIKIGTTKQQV-----LRLKQDGK----W----------ATNI---DG-TTLWYATSPVVELKNYIHT- |
9 | 4dlqA | 0.07 | 0.06 | 2.57 | 0.65 | SP3 | | EQVHTATMLLDVLEEGAFLLADNVREPARFLAAKQNVVLEVTVLSTEGQVQELVFPQEYASEIQLSAN---TIKQNSRNGVVKVVFILYNNLGLSTENATVKLAGEAGT----GGPGGASLVV----NSQASINKESSRVFLMDTV----AHLEAKNHFNAN |
10 | 5kevB | 0.14 | 0.10 | 3.39 | 0.60 | PROSPECTOR2 | | -----------------------PVHFYETSYKYQAHDVAINVSIKGNHFTSDIIIRKSENKNYYNVIGHGDIIQKNTHQYYLNFDNIDVYTGTNKYKEPTSISSLINKSNNIRVVYLSEEYVVVEFFFY-----DGQIITLHR-----------------Y |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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