>PF17542 (317 residues) MNNAIVLNNVNTNLFKKDIINNFVNNLTKSTCSTIANMLAIDYTLRLNSKPEAEKYIKKC VTRLKSYLGMRVINDDNFSVALELFAIMITYEYENEQNKDNILEQSQNVIAANLVEVYFS DAKITSSEKEKIKNIFKTLLKEKNFDKIINYAESHKKLFKMSVMYAMQKYNNIDQATIYI KKEFNKILDMSLAFTQKCNIFKQTTGKIVGAVCALLVGAISVATAGAAFSIIIVPTLIFA IRYAPALGEKIGEFILNNDNVIKLEQSNIDEFMKTLQNNKENLLSQEKVKKIKNNITVVP PTINSKLIKKVVNNKKN |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MNNAIVLNNVNTNLFKKDIINNFVNNLTKSTCSTIANMLAIDYTLRLNSKPEAEKYIKKCVTRLKSYLGMRVINDDNFSVALELFAIMITYEYENEQNKDNILEQSQNVIAANLVEVYFSDAKITSSEKEKIKNIFKTLLKEKNFDKIINYAESHKKLFKMSVMYAMQKYNNIDQATIYIKKEFNKILDMSLAFTQKCNIFKQTTGKIVGAVCALLVGAISVATAGAAFSIIIVPTLIFAIRYAPALGEKIGEFILNNDNVIKLEQSNIDEFMKTLQNNKENLLSQEKVKKIKNNITVVPPTINSKLIKKVVNNKKN | |||||||||||||||||||
1 | 4b4tQ | 0.11 | 0.11 | 3.96 | 1.19 | FFAS-3D | MSLPGSKLEEARRLVNEKQYNEAEQVYLSLLDETSILELGQLYV-TMGAKDKLREFISKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL------KHSLSIKLATLHYQKKQY-KDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESACQVLKYMLLSKIMLNLIDDVKNILIDAMKAVAEAYNNRSLLDFNTALKQYEKELELTRSHFNALYDTLLESNLCKIIEPEISHISKIIGLDTQQVEGKLSQMILDKIFY | |||||||||||||
2 | 5h7cA | 0.13 | 0.12 | 4.28 | 1.18 | PROSPECTOR2 | KFNLPNLNEEQRNAFIQSLKDSQSANLLAEAKSLNVNQAVKQLAEKAKEATDKEEVIE-IVKELAELAKQSTDSELVNEIVKQLAEVAKEATD-----------KELVIYIVKILAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKVKQLEEVAKEATDKELVEHIEKILEELLNVNQAVKQLAEKAKEATDKEEVIEIVKELAELAKQSTDSELVNEIVKQLAEVAKLVIYIVKILAELAKQSTQLAEVAKEAVKILAELAKQSTDSELVNEIVKQLEEVAKEATDKELVEHIEKILEEKQS | |||||||||||||
3 | 5j1iA | 0.09 | 0.09 | 3.47 | 0.75 | SPARKS-K | RCQRCISELKDIRLQLEACETRTVHRLRLPLPARECAQRIAEQQKAQAEVEGLGKGVARLSAEAEKVLAAPTLRSELTLGKLEQVRSLSALEKLKTISLVIRGTQGAEEVLRAHEEQLKEAQAVTLPELEATKASLKKLRAQEAQQPTFDALRDELRGAQEVGERLQQRHGERDVEVERWRERVAQLLERWQAVLAQTDVRQRELEQLGRQLRYYRESADPLGAWLQDARRRQEQIQAQAVREQLRQEQALLEEIERHGEKVEECQRFAKQYINAIKDYELQLVTYKAQLEGSESVIQEYVDLRTELTTLTSQYIKF | |||||||||||||
4 | 5lj3S1 | 0.11 | 0.11 | 3.97 | 1.18 | FFAS-3D | -EGYLKRNRLDMGQWIRYAQFEIEQHDMRRARSIFERALLVDAELKVKCINHARNLMNRAISKLWYKYLIVEESLNNVEIVRSLYTKWCSLEPGVNKNWNGVREIYSKYVMAKWVRFENRHGNT-EFTRSVYSLAIDTVANLQNVNSFAHWEAAQQEYERSSALYQVAIEKNQLLKAGLLDFEIEETISYKRKMDYETILYLDLISEFPKQIMQTFEKAIVDSKNVQWKRYIYLWMRYICYVELELLEEELFQRLIDDIMYAKFLIRDVPKARKILGKELEVKLEFDRVRKIEKFIEFQDLQIWRGIYTIALDE--- | |||||||||||||
5 | 1vt4I | 0.16 | 0.11 | 3.76 | 0.45 | HHpred | ----------------------------------------------------------------------------QYKDILSVFEDAFVDNFDVQDMPKSILEEIDHIIMSK-------------DAVSGTLRLFWTLLSK-QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQRLQPYLKLRQALLELRPAWVALDV-CLSYKVQCKMFKIFWLLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---PYENCLLVLLNVQNAKAWNAFNLSC-- | |||||||||||||
6 | 5w53A | 0.11 | 0.10 | 3.64 | 0.69 | MUSTER | --STNTTDNIDY-----DISDESNYYLISQLRPHFSNIYFFDEFKRYASYTEIKRYEDIHKTKVNSLLNE-AIGIRAKNTVKGLINILENPQKFKTQRESVKLRQYEEKKEAFRGCLLNKNRKN-LDQIKKINNEIRDLLEKLKCSQ-----DCQTNVYFDMIKIYLVDFKKPYENYDTFIKQYKNSYLSGVDMIRKIEK--QIDNPVTINAIKFTQKEMGYIIDRFEYHLQKVKHSIDQVTALSDG---------VKPKQVT-KNRLKEYYFNIGNYYSIFKFGKDSLNMLNKALIHKEKIVH-NLLGELFGERIS | |||||||||||||
7 | 5vchA | 0.08 | 0.08 | 2.95 | 0.92 | CNFpred | -------------LHIDDFLNLFAQTINDSLETRSLSAQALSYVSSLIINPQYAAKFASLIPSVVQVLDATIRDTTNTKLIFNCLNDFLLLD-------SQLTGNTIADLVKLALQIAVN-SDVDEDIRVFAVQFVTSALV--YRKSKINQAKLGPEITLAALKVASEEINTPALTALRLISNASGELSVGVPIIEHLPTMLSSSNPFERRSILLAISVLTLSQFDKIIPATVTGVQLAALKCIVQLSTNLQDEVAR------YHEQYLPLVIDIIDSAKHVVIYKYATLALDGLLEFIAHNDIIKYLDPLMNKLFQ | |||||||||||||
8 | 1vt4I | 0.12 | 0.11 | 4.03 | 0.89 | HHsearch-2 | KDVQDMPKSILSKEIDHIILRLFWTLLSKQEQKFVEEVLRINYKFLMSPIKTEQRQPMYIEQRDRLYNDNQVFAKYNVSTVLMLQKLLQIDPNWTSRSDHSSNIKLRIHSIQAEL-RRLLKS--KPYENCLNAKAWNATTRFKQVTDFLSAATLTPDEVKSLLLKYLDCRPLPREVLTTNPRRLSIIAESIRDDNWKHVNCDKLTTIIESSLNVLEPA-----EYRKMFDRAHIPTILLSLIWFVIKSDVMVNKLHKYSL--VEKQPKYLELKVKLENEYALHRSIVDHYNIPKSDDLIPPYLDQYFYSHIGHHLKN | |||||||||||||
9 | 4widA | 0.11 | 0.10 | 3.77 | 0.83 | Neff-PPAS | LFESANDDPIKT---LEEIIQEGDDVVGAHQLVVTQIKLRVQRNRRLADETDIRKVFSDKFEKLEQGIQNSYLLDKLKTPFQDMRCLFEVANEQFNDTPVPPQYKEFMVCLKQIVQYAVNSSSLEKFVMLTKKDDIKDRVTYTCMKYLLMAMQGTNNEEHAKLFFQLSNYDDLTDANHDGLELIKKLDKEQKEVAFHVNNFTHLVTTLGMALYKEGHQKNDEAMLGMHTPITMLSDQVRVL--ILYLIDEIVHAIHTNSNQ------SNDELIDGLKPKVRIVINEFHATLMMGIDKM--KFYSLNELREIVNDKI- | |||||||||||||
10 | 4uetA | 0.13 | 0.07 | 2.29 | 0.42 | HHsearch | ------------------------------------------------------------MG--SSHHHHHH-----------------SSG--HMFKYEDIPADYRDLMPPE-ARDFLQNL--SDGDKTVLKEVFKA-GPYKNTEESIAALKKSPELGAK-VEKLHAMVKKIAALGPEAKGFAEKSIEIARGIKARKDDLKASVKEVLKLYKAMS--DAGKADFGKQFPFL---------------AKV-----FESGKAAKFAGEN------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |