Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | PLLWNAIKSVFFAVVSYGIDRIAKKYAPAIVALGVIVSAIVGAVTVYLNFMFEKIAQLNETIPEVVLNVWGWVMPGNAIPCLTILLTARAMSWFVKMGLNVIN |
1 | 5k7vA2 | 0.11 | 0.11 | 3.88 | 0.81 | SPARKS-K | | ARAISAIAELAKKAIEAIYRLAIALLATLAILAIALLAFMAKAISAIAELAKKAIEAIYRLAPTYIEKAIEAIEARKAIKAIEMLAKKSAIDEIREKAKEAIK |
2 | 5xsdL | 0.10 | 0.10 | 3.61 | 0.82 | FFAS-3D | | -LITNEIKQHVDSSLDNFNQYILNGTPSKKESYNNEVILAKQKIGNLKYILRDLDNTLDSYIESSKNTISAYENKEGYVFYYDDFVAANIASYCDAYASTLMQ |
3 | 4m58A | 0.13 | 0.13 | 4.38 | 0.22 | HHpred | | ALGAN---SFNMAFIAPFVGYGIYRLMLSLKVLSSAIGGYVGIAAALATAIELGLQPLLFHFPYGLNVAIPAMMFAHLTGIVEAVITGLVVYYLQKVDEENIL |
4 | 5ogeA2 | 0.08 | 0.08 | 3.07 | 0.93 | MUSTER | | AVPIYTIFKNLTIILIAYGEVL-GSVT--SMELSSFLLMVLSSVVATWGDQSSTTYSMVGALNKLPIALSGLIFPRNFLSILSIFIGFLSGIIYAVAKQKKQQ |
5 | 3rkoB | 0.12 | 0.12 | 4.15 | 0.87 | CNFpred | | PVSALIHAATMVTAGVYLIARTHGLFLPEVLHLVGIVGAVTLLLAGFAALVQDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVI |
6 | 4m58A | 0.12 | 0.12 | 4.12 | 0.55 | HHsearch-2 | | ALGANSF---NMAFIAPFVGYGIYRLMLSLKVLSSAIGGYVGIAAALATAIELGLQPLLFHFPYGLNVAIPAMMFAHLTGIVEAVITGLVVYYLQKVDEENIL |
7 | 4tkrA | 0.12 | 0.12 | 4.14 | 0.80 | Neff-PPAS | | -YILAFSFIAFSGVFSKQVRSNLAANQLKKAIEWAWGTMIIGGVARYFWHYVAGVLFWGAYAFQGWGAQLFSIVMNGASCLGTVLVSGIIISILLKTSPKLFL |
8 | 6m97A | 0.15 | 0.15 | 4.92 | 0.46 | HHsearch | | EMVAACFGCFLLAVLYEGLKIGREFLLRRNDLEDNWETLNDDALGEQLLSMAHLLQTVLHVIQVVVYFLMLVFMTYNAYLCMAVAAGAGLGYFLFSWKKAVV- |
9 | 6mjpF1 | 0.06 | 0.06 | 2.55 | 0.88 | SP3 | | ETIKSQFAIFFVLFLVFLSQKFIRVLADMILSIVGLNMPAMGLLMLPLSLYIGILLTFGRLYNKFLIRAALYL--ALITASVAAFNALWLAPWSQDKEAHLME |
10 | 4g32A1 | 0.07 | 0.07 | 2.80 | 0.60 | PROSPECTOR2 | | N--VDWLLKTAGVIVELIVNFVASLPASAAAQFERIAAGLSGDLEAARQVHEALLEEAKN--DPAAAGSLLLRFTELQTRVIALLTRVGLLVDDILKSASNLV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|