Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | MDLQLITTEMVVEAYGDTTDGISVFKGNRRVGYITDLKKDLAKQVKRKTTIKEYRNRRLEQARDMLPDAVEEMKVFLENQLAKYDCEVFINQTQPNVHINSCKCYIIVNPLTGKHRLGISNPNRSASDMAEDVEACFKISKSPAEHHILINGLSQDDIVEVIKTLCM |
1 | 5t5sA | 0.10 | 0.10 | 3.72 | 0.74 | SPARKS-K | | AESLKKCLSVMEAKVKAQTA-----PNKDVQREIADLGEALATKDELRETLKSLKKVMDDLDRASKADVQKRVLEKTKQFIDSNPNQLVILEMESGATSPQTSAMLFTVNEAGKITCLCQVRGLKASEWVQQVSGLMDGKGGGKDVSAQATGKNLQEALQLATSFAQ |
2 | 1iru1 | 0.12 | 0.10 | 3.38 | 0.67 | FFAS-3D | | ----------------RDSPKCYKLTDKGCSGFHGDCLT-LTKIIEARLKMYKHSNNKA--------MTTGAIAAMLSTILYSYYVYNII----GGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH---VPLSLDRAMRLVKDV-- |
3 | 3c7bA | 0.12 | 0.10 | 3.37 | 0.38 | HHpred | | ------------------------LEKGPWPSFVKEIKKTAELMEKAA----------AEGKDVKMPKGARGLLKQLEISYKDKKTHWK-HGGIVSVVGYGGGVIGYSDGEEHFHTMRINQPWYSTKAVWEKWG-SGLTNFHGSTGDIIFLGTRSEYLQPCFEDLGN |
4 | 4i1uA | 0.10 | 0.10 | 3.56 | 0.70 | MUSTER | | HHHMYATVADLFAARGADTDLIAITAPAGLA--MPAIEQTFGPAFVARARMRALIFSDEDARRRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVESDRVLVVDCPVDTQIARV-MQRNGFTREQVEAIIARQATREARLAAADDVIVAATPDALAVQVDALHQ |
5 | 3pl5A | 0.12 | 0.10 | 3.37 | 0.71 | CNFpred | | ---AVMARDIVLEEYP--QASIEIVDTLAATGGEGYLAMLAAQAREE-------------------GKSLKETKELILDVGP--RLRTFFLVDLYHLMR-NIKPLLWLDA---SGKLVPIAKLRGMKEMLKRATADV------HDTAVVAYANDSEAAENLKEQLLA |
6 | 1vt4I | 0.13 | 0.13 | 4.35 | 0.42 | HHsearch-2 | | SMMTRMYIEQRDRLYNDNQV--FAKYNSR-LQPYLKLRQALLELRPALDVCLSYKV--QCKMNCNSPETVLEMLRRLLKSKPYENCLLVLLNVQNAKAWNSCKILLTTRATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT--TNPRRLSIIAESIRD |
7 | 3tlxA1 | 0.05 | 0.05 | 2.46 | 0.71 | Neff-PPAS | | FSTIDLLNELKRRYACLSKPDGRYIFLKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNREDDNEDVLKKRLTVFKSETSPNKNLLINLDAQPANDLEKKISQHID |
8 | 3ezjG2 | 0.23 | 0.07 | 2.26 | 0.30 | HHsearch | | ---------------------------------------------------------------------------------------------------------------RTEEV--IPLDNASASEIARVLESLTQIVADERTNSVIVSGDTRDKMRRLIRRLD- |
9 | 2pbrA | 0.09 | 0.09 | 3.41 | 0.56 | SP3 | | MLI-AFEAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLTELDERTELLLFEASRSKLIEEKIIPDLKRVLSTIAYQGYGKGLDVLNEFATRGVKPD-ITLLLDIPVDIALRRLKEKNRFENKEFLEKVRKGFLELAKEEENVVVIDASGEEEEVFKEILRALS |
10 | 2wwfA | 0.10 | 0.10 | 3.59 | 0.67 | PROSPECTOR2 | | HMTDDKKKKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSNETIHLLFSANRWEHMNEIKSLLLKYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQKKIYETYKHFAHEDYWINIDATRKIEDIHNDIVKEVS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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