Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | MTSTVNLGSDTASKWTVIKSRCNSCCRILVSCAAVICAILALIFLVATIGLSVKLAFTVQEVHNCKQKLSGASTTTAAIYTTPSTMIEALQTNQLKLTTNERRSTPPDCLVEKKLCEGEVRYLKTKGCLGAREGEDLNCIDLVAECVGKPCGHNEDYKECICTNNGTATKCCYN |
1 | 1yypA2 | 0.15 | 0.09 | 3.08 | 0.67 | SPARKS-K | | ---------------------------------------------RESENSAVHVDLDFGVVADLLKWIGP-TGTVQILVHAPAIKFILTNGSELEFTSN-----------------NRVSFHGVKNM-------RINFYQTLLNCAKLPCTTEHDTLLYVASRNGLFAVENFL |
2 | 3jc8Na | 0.09 | 0.07 | 2.80 | 0.46 | FFAS-3D | | MMIRINLLPVRAVKKREMGRQVLVLFAVVLIGAGVANYLWYDDRQSELEAHQAGVASTKARIAELEKIIGEVKNINTRKAEVEKKLLRKGRSGPVRMMDALASATPKKVWVKTSENNNAVSIDGS--------AVSHDEVAEFMR----------------------------- |
3 | 2lorA | 0.16 | 0.07 | 2.48 | 0.31 | HHpred | | ----VNLGLSRVDDAVAAKAACQS--HAFMKGFTFVGMAFGSLLVAVVAGSVVSYGVTRVESEKCNNLWLFLETGQLPKDRSTDQRS--------------------------------------------------------------------------------------- |
4 | 3jc8Oa | 0.13 | 0.11 | 4.01 | 0.64 | MUSTER | | MDKYL----DQFVKAPPAI-------KFGG-LAFVVGALTAANFFMVIQPTEEEIGWAVAERRKLDLELADKSEIAQNL-NERRREMDVLEQKLSEALTELPEQRDIEELLANDIGSGELSSVTPGKESVGGGEHEILFLQEMAN-VNDSAKLKNEKVVLQSEFQATTFR--FV |
5 | 4iwoA | 0.09 | 0.03 | 1.10 | 0.60 | CNFpred | | -------------DASMAKAITGVVCYACRIASTLLLYQELMRKGIRWLLIKDDYNETVHKKTEVVITLD-------------------------------------------------------------------------------------------------------- |
6 | 2lorA | 0.17 | 0.08 | 2.66 | 0.45 | HHsearch-2 | | ---MVNLGLSRVDDAVAAKAACQSHAFMFVTGTGMAFGLQMFLLVAVVAGSVVSYGVTRVESEKCNNLWLFLETGQLPKDRSTDQRS--------------------------------------------------------------------------------------- |
7 | 2x0cA2 | 0.12 | 0.10 | 3.68 | 0.72 | Neff-PPAS | | ETVRELLENPVQP---INDMSYFGCLDSVMENSKVLGEAMTGISQNAKNGNLPEFGDAIATASKALCGFTEAAAQAAYLVGVSDPNSQAGQVP-AQISPEGRAAMEPIVISAKTMLESAGGLIQTALAVNPRDPPRWSVLAGHSRTVSDSIKKAPGQL---------------- |
8 | 6me2A | 0.16 | 0.13 | 4.39 | 0.52 | HHsearch | | -----------RP----------------SWLASALACVLIFTIVVDILGNLLSLAVANSIFLHCQVSAFGLSVIGSYIHSSSKNSLCTLAAVLPNLRTLQYDPRIYSCTFAQSMCLGAIPIASAVGGLRDKAGDP---GELAN-AILKALELSRSLSNCKKRKKPQDFRICF- |
9 | 6etxG | 0.06 | 0.06 | 2.71 | 0.57 | SP3 | | LFHRKGINEESCFSFLRFIDISPAEMANLMLQGLLARWLALFLSLKASYRLHQLRSWGAPEGESHQRYLRNKDFLLGVNFPLSFPNLCSCPLLKSLVFSSHCKAVSGYSDQVVHQRRSATSSLRRCLLTELPSFLCVASPRVTAVPLDSYCNDRSAEYERRVLKEGGSLAAKQC |
10 | 2mxxA | 0.10 | 0.09 | 3.37 | 0.64 | PROSPECTOR2 | | MADEATDAARNNDGAEYLAQHDGEIRAEAAADPAVVAAKAALGEVKAAYEAAFNNAFNAVRNKYVQRFQATYNNATEQEGKTYIQGETPEQANARYLKRVGAANNQNPAAED-----------KGATTPASKEEAKKS--------EAAAKNAGKAAGKALPKTSAVKHHHHHH |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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