Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | SHRNDSSRKHRKSRSIKNDQHYPTVSFDGAESVDIPADEGKSPVSTHLSLASNPTEFKFMDEIALLKRGRIDKDAPKHPYNRRGQQPMMKKEISVTSAHSNSSLPVRSPAIMTLMGGVPEAEKEYNVGKGGLLKISKMKEGGKRYEVSANERFTVFQQTAGQTCLFTFKA |
1 | 3j65q | 0.05 | 0.05 | 2.16 | 0.78 | SPARKS-K | | AISEKQLEELLNQLNGTSDDPVPYTFSCTIQ------GKKASDPVKTIDI---------TDNLYSSLIKPGYNSTEDQITLLYTPRAVFKVKPVTRSSSAIAGHGSTILC---SAFAPHTSSRMVTGAGDNTARIWDCDTQTPMHTLKHYNWVLCVSWSPGEVIATGSMD |
2 | 3dpaA2 | 0.10 | 0.05 | 1.74 | 0.45 | FFAS-3D | | ---------------------------------------------------------------------------PNEVWQDQNPTPYYVTVIGLGGSEKQAEEGEFETVML-----SPRSEQTVKSANYNTPYLSYINDYGPVLSFICNGSRCSVKKEK---------- |
3 | 4tq2A | 0.11 | 0.08 | 3.00 | 0.24 | HHpred | | -----------------------------LRSSHNIAAQ-LEEVNSDIDITQAADDSE-F--LDICKTYNFEPEKACSSIRM-SWEGSSDWDENE-VIKGSTVLKERKGKLLRS---VIPAVGEWTMQEDGTFVLHTFYDRAAAEEFATPDRCSIIKTQHGKGVLASLST |
4 | 4a0tA | 0.10 | 0.10 | 3.69 | 0.74 | MUSTER | | LESASDKAHYILSKDGNRNNWYIGRGSDNNDCTFHSYVHGTQDYAVVNKHFHVGQAVVATDNIQGTKWGGKWLDAYLRDSFVAKSKAWTQVWSGSAGGGVSVTVSQDLRFRNIWIKCANNSWNFFRTGPDGIYFIA-SDGGWLRFQIHSNGLFKNIADSRSVPNAIMVEN |
5 | 6fb3A | 0.17 | 0.05 | 1.55 | 0.60 | CNFpred | | -------------------------------------------------------------------------------------------------------------------------IVTLAVGTNGGLKLVSTQ-TLELGLMTYNGLLATKSDETGWTTFYDYDH |
6 | 2kr0A | 0.14 | 0.12 | 4.02 | 0.53 | HHsearch-2 | | IQQTDDSLIHFCDRTSGVEDD--LIIFPDCEFKRVPQCPSRVYVLK-FKA-GEPKDEEHCRKVEYLNNPPMPGALGASGSSGHELSALEGGNMSHSQSSSSAALASGLGPLMCQFGLPAEAVEAFNAKPEQKEGDTKKKDEEEDMSL----D------------------ |
7 | 3j0fI3 | 0.12 | 0.12 | 4.12 | 0.97 | Neff-PPAS | | --RLKETTAGYITMHRPRPHAYTSYLEESSGKVYAKPPSGKKCGDYKTGTVSTRTEITGCTAIKQCVAYKSDQTKWVFNSPDRHDDHTAQGKLHLPFKLIPSTCMTDHLTLLTTRRLGANPEPTTEWIVGKTVRNFTVDRDGLEYIWGNHEPVRVYAQESAP-------- |
8 | 3mx7A | 0.15 | 0.08 | 2.58 | 0.34 | HHsearch | | -------------------------MTDLVAVWDVALSDG------------------------------VHKIEFEHGTTS-GKRVVYVDG--KEEIRK------E--W----MFKLV-GKETFYVGKKATINIDAISGFAYEYTLEINGKS--LKKY---------M- |
9 | 6d4hA | 0.09 | 0.09 | 3.38 | 0.56 | SP3 | | LITETGYMDQIIEYLYPCLIITPLDCFWEGAKLQSGTAYLLGKPPLRWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPATAPNKNSTKPLDMALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVSAHALQTMFQLMTPKQMYEHFKG |
10 | 1bwmA | 0.10 | 0.10 | 3.68 | 0.76 | PROSPECTOR2 | | AVTQSPRNKVAVTGGQTNNHNDTGHGLRLIHYSYGAGSTEKGDIPDGYKAGQGRAEQFFGPGTRL----TVLGSDYKDDDDKRSGGGGSGGGGSGGSGAQQQVRQSPQSLTVSYEDSTFDYFPWYRQFPGKSPALNKKEDGRFTIFFNKREKKLSLHTFGAGTRLAVSPY |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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