Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | LTPNTYEKKEFKENTDYLHEKSLYENKKEIPEEQKDLTFTKKNLDPLKEVKDQLFDGGATTNNTITAKADQLQLFSDSKQESFLKAEDQTPAEQDNKLIFLYIILLVIAIGVIMGFLIPRMAKQ |
1 | 5a9q1 | 0.08 | 0.08 | 3.18 | 0.97 | SPARKS-K | | YENLLTEDETDDVDIRDVICKCLRLIEESVTVEMSCYNLQSPEKAAEQILEDMITIDVENVMEDICSKLQEIRNPIHAREMDYETRMNLTQLYGSNTAGYIVCRGVHKIASTRFLICRDLLILQ |
2 | 2ksrA | 0.09 | 0.06 | 2.13 | 0.59 | FFAS-3D | | ------------------------------------------------SLAILVFYLPSDCGEKMTLCISVL-LALTVFLLLISKIVPPTSLDVPLVGKYLMFTMVLVTFSIVTSVCVLNVHHR |
3 | 6eznH | 0.15 | 0.10 | 3.54 | 0.29 | HHpred | | ----------------------------------YRIDLAKLDAALQEPIKATLILASSTPKENLFREILQLNLNFHSDSDKFGIPEHAEPKRVAKPIAVIFVLIIFITILSLIV-TWLNSCA- |
4 | 3tnfB | 0.14 | 0.14 | 4.66 | 0.79 | MUSTER | | L--DEYEQAIKRAQENIKKGEELEKKLDKLERQGKDLEDKKTYEENLEGFEKLLTDSEELSLSEINEKMEAF---SKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKK |
5 | 3mk4A | 0.10 | 0.06 | 2.10 | 0.65 | CNFpred | | ---------------------------------------------MLPTLREALMQQ-----LNSESLTALLKN---RPSNKLEIWEDLKIISFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYL |
6 | 2pffB | 0.16 | 0.16 | 5.35 | 0.65 | HHsearch-2 | | LEGNDAAKKTKELIKNYITARIMFDKKSNVGEGQLVAIFGQGNTDDYFEELRDLYQTYHVVGDLIKFSAETLSELIRAEKVFTQGLNESNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF |
7 | 2otoB | 0.08 | 0.08 | 3.18 | 0.99 | Neff-PPAS | | HENKDLKARLENAEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQASQDYNRANVLEKE |
8 | 4yuuJ2 | 0.09 | 0.02 | 0.91 | 0.39 | HHsearch | | -------------------------------------------------------------------------------------------GRIPLWLVVTFGGIVVLTVLGIFIYGSSGLGS- |
9 | 1lkxC | 0.12 | 0.11 | 4.01 | 0.82 | SP3 | | LSQSKLDELGLTPNAPYLKKSGCFDVSTILKESDQNITFAEAAEQRTGTT-----TVKVSDTKSLAAAASCLKTDQQSLSIALCYRSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTI |
10 | 5m1mA | 0.11 | 0.11 | 4.04 | 0.51 | PROSPECTOR2 | | VAPETRTASAITGGKSACKSAAKLIKNEHLPLMSGEMRCLYPEIKPWKKASDMLNKATSSLKKSEGRDIRKQ-MKAAGDFLGVESMMKMRAFRDDQIMEMVEEVYDDIRIGTITAWLRCKNKKS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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