Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | TFDVKSRMSFRVWVFAGTAGFGLIGAWLFYEAIKLESKYSLLYVGVGTFGVIYGLMTFLMVFPAFTKKGNIIFTIIEGEDGRIFSGKKSVLFKDIKSLKMAEHRYSPKGIFLMDILIETRGNGRVRIPTYNILPEPEFYKAVELYILPYMTEEARAEWIGQFTEAQR |
1 | 3tnfB | 0.10 | 0.09 | 3.30 | 0.74 | SPARKS-K | | ALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMLLHKHNGLNLKLANLQDMLAVHRKEK----SFFNEKGEEVTS-----LNDAHYVIGQQLFNLGGKFYPIHQKILEKDGKFYLLKQGE--DWESIK----------DSPEKQKKAEHDFHKLQY |
2 | 4aw6A | 0.07 | 0.07 | 2.67 | 0.54 | FFAS-3D | | -------KDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYADYIAPLFDK------FTPLPEGKLKEEIEVMAKSDFPLTKVYVVEGSKRSSHSNAYFYGFFKNKRIVLFDTLLCKNEEVLAVLGHELGHWKLGHTVKNIIISQ----- |
3 | 5xbfA | 0.10 | 0.07 | 2.68 | 0.36 | HHpred | | -----CSRE--DAIHLAGLIYKA-----QFNNDRSASSEEWKKSILLALRWPTFGSAFFEV-KQTSEPDVILIAI--NRHGVLLIKTTTYPFTKISSWSSGS----------TYFHMALGSGSRLLCETS---LGYKMDDLLTSYVQQLLS---------------- |
4 | 3zc4A | 0.08 | 0.07 | 2.85 | 0.70 | MUSTER | | PVETISKRFWTLIKLRFYVVLRFGYIDPLIYSIDPKQIKDVLSEALREFVSYTSSSSSRSIVIYDDPKNPVTAQAPCL----VVAKRDEIPQNFPSIYRYTIYKIDKSSEYCISPLVVNDKYATLITPN----VIKEFFDKLDSNI-----QYARVLASLAVGGE-- |
5 | 5xtcr | 0.07 | 0.02 | 0.99 | 0.72 | CNFpred | | ----------LKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCLANSNYERTH---------------------------------------------------------------------------------------------------- |
6 | 4ifsA2 | 0.15 | 0.08 | 2.81 | 0.55 | HHsearch-2 | | ---------------------------------NFQG------------------HSGAQCITCSYKA-SSGLLY-PLERGFIYVPPVHIRFDEISFVNFARGTTT---TRSFDFEIETKQGTQYTF---SSIEREEYGDFVNAKKLNIKN---------------- |
7 | 3zc4A | 0.08 | 0.07 | 2.79 | 0.71 | Neff-PPAS | | -----AETISKRFWTLIKLRFYVVLR-----------RFGYIDPLIYSIQIKDVLSEALREFVSYTSSSSSRSIVIYDDPCLVVAKRDEIPQNFPSIYRYTIYKIDKSSEYCISPLVVNDKYATLITPNESVI--KEFFDKLDSN-----IQYARVLASLAVGGE-- |
8 | 4tyzA | 0.15 | 0.08 | 2.62 | 0.65 | HHsearch | | ------NI------------------------------E-----------------GVFRKSFPDWVEGQGYLFI--TPHWLCFQAHFSIEYDEIKDIIKSKSV----KMFENAIEVKTHLNDTIFLTNFL--QRDQAYSALM------------SQWLK------- |
9 | 5cowA2 | 0.06 | 0.05 | 2.35 | 0.60 | SP3 | | ---------GLQRSVFKSSVFLGHHIIQIFMGAKKPFQDWSFVGLAQDFEC----PWRRLAIAELLKKFSVSVVEKVFDNPVALIPQHESDNEAL--IELVTNALRFALWIVEF---YETETNEKSIKELAFLDHSSKTLLIESFFLQGKDVKDQDHLKRIIDALEK |
10 | 1osnA1 | 0.08 | 0.07 | 2.89 | 0.60 | PROSPECTOR2 | | VLLIGEPLSYWRNLAGEDAICGIYGTQTRRLNGDVSPEDAQRLTAHFQSLFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMGDMSPAALPGLLF--------TLPAEPPGTNLVVCTSESPFVLSLEQTPQHQELKTLLPQMTPANMSSGAWNILKELVNAVQD |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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