Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | LEILFAKIVKKQNESKQHRLINFISRAMPGGVDAPVAMMAEYETFKSDKSANFLNDGAGHVVFRQYRRARLSDILHNVNRRAGGV |
1 | 4bj1A2 | 0.12 | 0.12 | 4.18 | 0.78 | SPARKS-K | | YQKFKSMALQELGTNYLAQEQEYLKKMIKFTFDSGSKLLQSYNSLVTNKESNFLKVFPHTYLFNAYTEITFDELLDKIRNRLTIK |
2 | 5xpqA | 0.11 | 0.11 | 3.79 | 0.54 | FFAS-3D | | LYKLKAEFFKTLAHPARIRILELLVERLSSDVGLESSNLSQQLGV--LRRAGVVAARDGNAMIYSIAAPDIAELLAVARKV---- |
3 | 1tuzA | 0.12 | 0.11 | 3.76 | 0.28 | HHpred | | VSDVLKLFEDKGDAIGYEGFQQFLKIYLEVDN-VPRH-LSLFQSFETGHCLNETNVTKDVVCLNDVSCY-FSLL-EG-GRPE--- |
4 | 6euoA | 0.19 | 0.18 | 5.69 | 0.59 | MUSTER | | LSNVGNLLVKAFGNYENPDYIASLHLHAFQLL--PERITRILSQFGSDFSAE----QYGAIVFQGLIEVDQDDLGPTPPNWQGAD |
5 | 1wppA | 0.08 | 0.07 | 2.81 | 0.43 | CNFpred | | DKVIAPELAELAGVNLEEYGLAMLKAGTNL------ASKSAEELIDI--DAKTFELNGNNVRVAQVNTVDIAEVLERQAEIEAAI |
6 | 1kfuL | 0.18 | 0.18 | 5.74 | 0.38 | HHsearch-2 | | VRRLFAQLAGEDAEISAFELQTILRRVLAKRQDIKSDGF-SIETCKIMV-DMLDSDGSGKLGLKEFYILWTQKIYREIDVDRSGT |
7 | 1bt6A | 0.14 | 0.13 | 4.42 | 0.72 | Neff-PPAS | | MMFTFHKFAGDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDDQ------CRDGKVGFQSFFSLIAGLTIACNDYFVVHM |
8 | 1tuzA | 0.11 | 0.11 | 3.79 | 0.30 | HHsearch | | VSDVLKLFEDKGDAIGYEGFQQFLKIYLEVDN-VPRH-LSLFQSFETGHCLNETNVTKDVVCLNDVSCY-FSLL-EG-GRPEDK- |
9 | 3a5wB | 0.09 | 0.09 | 3.54 | 0.71 | SP3 | | FARRYEDFQRLGSVFSHIKWKEWIERHIGVRIDPQGTVARRLGLLHAESATHFIVDARGVIRTMLYYPMILRIVKALKLGDSLKR |
10 | 1ksoA | 0.09 | 0.08 | 3.15 | 0.42 | PROSPECTOR2 | | ARPLEQAVAAIVCTFQEAELKELLQKELATWTPTEFRECDYNKFMSV-----LDTNKDCEVDFVEYVRS-LACLCLYCHEYFKDC |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|