Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | MKELTFETLIAVFEEIFGRGLFWVMVAVAVVVTLAYLYVLIRDRSVSWRKFLWAQLSMPVGAVLAVLFVLRMTRSGVSDMGGPIDVIVLLGVAAAGAVGLAILVYTVESLI |
1 | 6a2jA3 | 0.12 | 0.12 | 4.10 | 1.10 | SPARKS-K | | ---PLQIGKKMQFHMIGILIYSYIVVLLLFVWIIVAAVHAITSYK-DQKQIFWGWISCLIFITLQALSGIMIVYSELAL---GFALAHSFFIACLFGVLCYFLLLIARFRY |
2 | 6a2jA3 | 0.09 | 0.08 | 3.11 | 1.01 | SP3 | | ---PLQIGKKMQFHMIGILIYSYIVVLLLFVWIIVAAVHAITSYKDQKQIFWGWISCLIFITLQALSGIMIVYSEL------ALGFALAHSFFIACLFGVLCYFLLLIARF |
3 | 3rlbA | 0.08 | 0.08 | 3.19 | 1.03 | SPARKS-K | | WIIVEIACIPILLLSLRRILSLSQAFLEYLVAPVSLGIAGLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWAYSLAVNGISGILTAIAAFVILIIFVKKF |
4 | 5o0tA | 0.13 | 0.13 | 4.35 | 0.87 | FFAS-3D | | ------SAYIKYYIENNWVKIAFLALYVFVNMFFFMSAVEKYESQGANLYVQIARGCGATLNLNGALILIPMLRHFMTWLRKPIDESIEFHKLVGQVMFALAIVHTGAHFL |
5 | 5jsiA | 0.14 | 0.11 | 3.68 | 0.28 | HHpred | | -------------EELTYRLFM-VATVGMLAGTVFLL-ASSREVKPEHRRGVYISAVCGIAWYHYQKMGASWESGSYDTGLRYVDWVLTVEVLAVTRKG------------ |
6 | 3wajA1 | 0.14 | 0.14 | 4.65 | 0.80 | MUSTER | | TARQMAYPVIAGITIGLYVLSWGAGFIIAPIILAFMFFAFVLAGFVNADRKNLSLVAVVTFAVSALIYLPFAFNYPGTIFYSPFQLLVLLGSAVIAAAFYQIEKWNDVGFF |
7 | 3rkoB | 0.14 | 0.12 | 4.02 | 0.92 | CNFpred | | ------VYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQA----------WDAAIFHLMTHAFFKALLFLASGSVILACH |
8 | 5tj5A | 0.12 | 0.12 | 4.14 | 0.55 | HHsearch-2 | | KDGKPAPGLLNMHQAKVQVFLL-LMALVCIPWLLLVKPLHFK-FDIMIHQVIHIEFLNCVSHTASRLWALSLAHAQLSSVLGFVGVFMTVALFAMWFALTCAVLVLMEGTS |
9 | 6a2jA3 | 0.10 | 0.09 | 3.38 | 0.89 | Neff-PPAS | | -----LQIGKKMQFHMIGILIYSYIVVLLLFVWIIVAAVHAITSYKDQKQIFWGWISCLIFITLQALSGIMIVYSELALGFALAHSFFIACLFGVLCYFLLLIARFRYES- |
10 | 2l35A | 0.14 | 0.08 | 2.76 | 0.43 | HHsearch | | CSTVSPGVLAGIV---VGDL-------VLTVLIALAVYFLGRLGTAEVLGIISIVLVATVLK--TIVLIPFLEQN------------------------------------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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