>PF17316 (256 residues) NSPTLNHLYKYPVVSRTLNQVVSTPVISQLLSVIVLVVASVRHTLVDSEYSPKFVKIGYN AISGFGLRFDELVNVLFLREGIDAFLRGWDSHSHKPGFWLLFFWVDYVANVSNILLKQFV VQPFKLNVEDKREEDTKSDGTLPHVSELSSTTKSISKDLQSKLQSDYIGPTTDFARQKYD SLVKPTADKLQSEYIEPTRAQLNKVTEPTRAQAMETYKMVSNAYENNFNKSESVPRAVVN TGIDLKNFTIENLRSN |
![]() | |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | NSPTLNHLYKYPVVSRTLNQVVSTPVISQLLSVIVLVVASVRHTLVDSEYSPKFVKIGYNAISGFGLRFDELVNVLFLREGIDAFLRGWDSHSHKPGFWLLFFWVDYVANVSNILLKQFVVQPFKLNVEDKREEDTKSDGTLPHVSELSSTTKSISKDLQSKLQSDYIGPTTDFARQKYDSLVKPTADKLQSEYIEPTRAQLNKVTEPTRAQAMETYKMVSNAYENNFNKSESVPRAVVNTGIDLKNFTIENLRSN | |||||||||||||||||||
1 | 5cwmA | 0.08 | 0.07 | 2.60 | 0.70 | SPARKS-K | --DPEDELKRVEKLVKEAEELLSEEDLEKALRTAEEAAREAKKVLEQAEGDPEVALRAVELVVRVAELLLRIAKESALERALRVAEEAARLAKRQGDPEVALRAVELVVRVAELLLRIAKESG--------------SEEALERALRVAEEAARLAKRVLELAEKQGDPEVARRAVELVKRVAELLERIARESGS--------EEAKERAERVREEARELQERVKELRER-------------------------- | |||||||||||||
2 | 3i9wA | 0.11 | 0.10 | 3.69 | 0.84 | FFAS-3D | --PTMNMARQ---LSEASAWELFAQAQGRMLTAQSLKINALLQALREQGFDTTAIEQQEQEISRSLRQQGELVGRLQLRQQQQQLSQQIVA--------AADEIARLAQGQANNATTSAGATQAGIYDLIEQDQRQAAESALDRLIDIDLEYVNQMNELRLSALRVQQQKNAPTLEKQLNNAVKILQRRQIRIEDPGVRAQVATTLTSQYSDLLALYQQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDTIELRN | |||||||||||||
3 | 2pffB | 0.14 | 0.12 | 4.12 | 0.45 | HHpred | ---SLEHVLLVPTAS---------------FFIASQLQEQFNKIADDEPTTPALVGKFLGYVSSLVGQFDQVLNLCLTGNDIHALAAKLLQENDTT----LVKTKE---LIKNYITARIMARPFDKKSNSALFNAGGQGNTDDYFEELRDLYQT-YHVLVGD----LIK----FSAETLSELIRTTLDAEKLEWLTPDKDYLLSIPISCAHYV--VTAKLLGELRSYLKGATGHSQGLVTAVDSWESFFVSVRKA- | |||||||||||||
4 | 6oqqA | 0.11 | 0.11 | 3.92 | 0.67 | MUSTER | SSGTANSL--FTGKRRLFGNYLYLNTIAEYLLVIQLTLGSYGDKVTRDMMDKPKKEAVWRELANVMFTSCAEAIHIMTQSRALTLLKQIEKHFRQTQFWMTPDYSKLDEDTLQMEQYSIYSGEPEYEFTDKLVSGVGYNRESP-LRELEKLLYATVTLIEGTMQLD---KEFFKQLEQVEKILSGEIKTDANSCFEAVAQLLDLARPGCKRLVLSYYEEAKLKYPS--APTDAYDSRFQVVARTNAAITIQRFWR- | |||||||||||||
5 | 4fgvA | 0.09 | 0.08 | 2.99 | 0.79 | CNFpred | SEWSWHNCNVLCWAIGSISMAMNEETEKRFLVTVIKDLLGLTEMKR-----KDNKAVVASNIMYIVGQYPRFLKWKFLKTVVNKLFEFMHES----HEGVQDMACDTFIKIAKQCRRHFVAL--------------QPSENEPFIEEIIRNIGKITCDLTPQQVHTF----YEACGYMVSAQGRNQQERLLAELMAIPNAAWDEIIKAAILHEPDTIKIIGNIMKTNV----SACSSIGPYFFPQIGRLYNDMLQM | |||||||||||||
6 | 5tj5A | 0.21 | 0.09 | 2.97 | 0.60 | HHsearch-2 | PGTIDDELYPQAKVQVFLLALVCIPCVSHTASWALSAHAQLSSVLWTMTGFRGFV-GVFMTVALFAMWFALTCAVLVLMEGTSAMLHSLRLH------WVESMSKPYEPFAFEYKDMEV----------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 5cwqA | 0.07 | 0.06 | 2.45 | 0.82 | Neff-PPAS | SEEAERRLQEARKRSEEARERGDLKELAEALIEEARAVQELARVACERG-NSEEAERASEKAQRVLEEARKVSEEAREQG----------------DDEVLALALIAIALAVLALAEVACCRG-----------------NSEEAERASEKAQRVLEEARKVSEEAREQGDDEVLALALIAIALAVLALAEVACCRGNKEEAERAYEDARRVEEEARKVKESAEEQGDSEVKRLAEEAEQLAREARRHVQECRGGW | |||||||||||||
8 | 5tj5A | 0.20 | 0.09 | 2.75 | 0.46 | HHsearch | QAVKPLHFKFFNCVSHTASYLRLW-ALSLAHAQLSSVLWTMTIQIAFGFRG--FVG-VFMTVALFAMWFALTCAVLVLMEGTSAMLHSLRLH------WVESMSK--------------PYEPFAFEYKDMEV--------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 5kymA | 0.11 | 0.09 | 3.35 | 0.79 | SP3 | -------------MRKIRNLLLTLYFYFIATVYIVFYGGFVLFRSFLMRDREKARKYVLKEIEKFGKRAFTWLFSDVVVEGSENI------PKDRNSLMDIPLILGFVATGAFIAKEELRKIPG-VNWYIRYLNGVFLRAV--------RALREAIEKLKNGVPDGKVLSFKKDSLMIAVKSIWGTYHLIPKGRWTFTPGKVHEPVDPKFSSEEELRKYVEEVVKRGVEELKARWSK------------------- | |||||||||||||
10 | 4ci6B2 | 0.11 | 0.11 | 3.80 | 0.93 | PROSPECTOR2 | VRRITPYYLRSDLLRTHLSSAATKQLMGVVLSDLDTMLVALDKAEREGGVDKDQLKSFNSLILKTYSVIGAYI-----LSIVEPSLQRIQKHLDQTHSFSDIGSLMRAHKHLETLLEVLVTLSQQGQPVSSETYSF-----LNRLAEAKVTLSQQLNTLQQQQESNRSGSWADVARQSLQRFDSTRYTAIHRQMMAAHAAITLQEVSEFTDDMRNFTADSIPLLIQ-LGRSSLMDEHLVEQREKLRELTLNRLERM | |||||||||||||
|
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |