Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | YIINRFNDSIINKEMYNDLDKSIDYGCIFTVGCLDECNNCPICKLSKEQLIDVLSGSERSSENECSVLVNCATKCIQQTNFNFIKTNYCLRHQCAYHCFDGSCPTCSAFVTRIFNQICIKGNLRKRINFKGQCYEMFREIVYKKFEKKFK |
1 | 5cwdA | 0.08 | 0.07 | 2.89 | 0.75 | SPARKS-K | | ---TKEDARSTCEKAARKAAESND-----EEVAKQAAKDCPT-KEAARSFCEAAARAESNDEEVAKIAAKACLEVAKQAGMPTKEAARSFCEAAARAAAESNDEEVAKIAAKACLEVAKQAGMP-----TKEAARSFCEAAKRAAKESND |
2 | 6mzcI3 | 0.06 | 0.05 | 2.29 | 0.64 | FFAS-3D | | --------------LIPAVMT-----CIVSRQLCLRPDVDALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDEKTPWTTRYGSIA---GLAELGHDVPRLQQEADHVQSLLLKHAPVLAKLRPPPDNQDLCSQVVKARAQAALQ |
3 | 4wv4B | 0.05 | 0.01 | 0.64 | 0.23 | HHpred | | -------------------------------------------------------------------------------------------------------LARRRTLQVVVSSLLTEAGFES----AKASVETLTEMLQSYISEIG- |
4 | 5yz0A | 0.11 | 0.11 | 3.87 | 0.64 | MUSTER | | FLTELFQLGGLPAQPASTFFSSF-LELLKHLVEMDTDQL-KLYEEPLSKLIKTLFPFEAEAYRNINMLLEKLCVMFEDGVLMRLKSDLLKAALCLLQYFLKFVPSALQVRKVYVRNICKALVLGIEVDAEYLLGPLYAALKMESMEIIEE |
5 | 3nd2A | 0.10 | 0.08 | 2.98 | 0.59 | CNFpred | | ------------NNILIAIVQGAQ----------STETSKAVRLAALNALADSLIFIKNNMEGERNYLMQVVCEATQAEDIEVAAAFGCLCKIMSLYYT-----FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYE |
6 | 4wv4B | 0.04 | 0.01 | 0.67 | 0.38 | HHsearch-2 | | ----------------------------------------------------------------------------------------------------NYHLARRRTLQVVVSSLLTEAGFES----AKASVETLTEMLQSYISEIGR |
7 | 5cwjA | 0.07 | 0.06 | 2.54 | 0.69 | Neff-PPAS | | KEARKSGTEESLRQAIEDVAQLAEEAIRVILRIAKESGSEEALRQAIRAVAEIAKEA--QDSEVLEEAIRVILRIAKESGS--EEALRQAIRAVAEIAKEAQDPRVLEEAIRVIRQIAEESGSEEARRQAERAEEEIRRRAQ-------- |
8 | 4wv4B | 0.04 | 0.01 | 0.66 | 0.26 | HHsearch | | ----------------------------------------------------------------------------------------------------NYHLARRRTLQVVVSSLLTEAGFES----AKASVETLTEMLQSYISEIG- |
9 | 4q2sA | 0.13 | 0.11 | 3.93 | 0.56 | SP3 | | --------IAESLRRLKEYVKA---------GSVKECVA-EWCNMPSVAGFDVLSEISYRMLENCLLLLTFIYHISLLDSVDDDRLSKRMEYISICLNIDVNDPKVETVVHPVLTLTREA--LLRQSEFFSPIFKRRLVVLLRALDGKIS |
10 | 2liga | 0.10 | 0.09 | 3.23 | 0.58 | PROSPECTOR2 | | MGGLLFSSLQHCQQGFVISNEL-----------RQQQSELTSTWDLMLQTRINLDASNQQSSAKTDLLQNAKTTLAQKNMTPLPAMAEASANVDEKY------QRYQAALAELIQFLYFAQPTQGMQNALGEALGNYARVSENLYRQTFD |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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