Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | LKRSNLSITNRLHSIQEDAYFVSEVTSAFNDRPLIANERCGSWYIAPQNKRGSAYFKSTDGHTGQWKFSTRRLNVHLLSIIGENDGCIIVDSTRRGKRMPDALSKTVPVWCCVLNRALFPNATERHRLYTPPNVVSESEHAQVEARIEGFVESLKRLDIDLEGLRGQVKRPLRPMWVTQDSQLVPTNEVFEDFHPVICCTCSRRVVGGEMSEGGYIQGAGDDTENWALGLTPPVFWEHEKELLSTPEADLRDVVLALV |
1 | 3s99A | 0.08 | 0.06 | 2.48 | 0.58 | SPARKS-K | | NVAEGADAERSIKRIARYMDPTVKVAKKFPDVKFEHATG-------YKTADNMSAYNARF-------YEGRYVQGVIAAKMSKKGIAGYIGSVP---------VPEVVQGINSFMLGAQSVNPDFRVKVIWVNSWFD------PGKEADAAKALIDQGVDIQVAHDR-G--IKAFGQASDMIKFAP----DTQLTAVVDERAKAVLDGTWKSQNIWWGMKEGLVKMAP--------------FTNMPDDVKKLAEETE |
2 | 5v9xA1 | 0.16 | 0.10 | 3.34 | 0.51 | FFAS-3D | | -------------PLGRFSALTREWFTT-------------------------------------AFAAPTPAQADAWSAISEGNNTLVIAPTGSGK--------TLAAFLWAIDRLADPQGTQ-VLYVSPLKALAVDVERNLRTPLTGITRVAERHGLPPNQRRAMIANPPDVLITTPESLTSAARETLTSVRTVIV----------------------DE----------------VHAVAATKRAHLALSLERL- |
3 | 1ztvA | 0.18 | 0.09 | 2.91 | 0.38 | HHpred | | ---------------KENVAYLQKIRHWFKDLPIAIELRNNSWYQPNFV-------------------------KQMLQFMKENQSLVIVDEPQIPTPVPFYPYVTNP------NLVLFRFHGRNAGWLANLYHYNTQEIADLSEAVLKMSQEAKEVGSNALQMQKVLNLSYDDL----------------------------------------------------------------------------------- |
4 | 5v3wA | 0.13 | 0.12 | 4.03 | 0.62 | MUSTER | | RPEAGGKV---FHPAGGSTVVYEPLLGRLPDTPMYGERVEGSIYVP-EMQGDGPYVLV--GW------SL-VLAYACAIGLRRLGFVGLIDAVRAGEEIPQTKEEIRKRWDRYAAFAEKTFNVTI------PAIPYEQLEELDEGQVRFVLDAVSQSGVQIAGIIEHQRTSYLDNRAIDTAQIQPYDG------HVTLYMADRYHDDAIMFEPRYA--VRQPDGGWGEDLEIQAI-PIIAKVGEH-SRALGQIEADRT |
5 | 5h1yA | 0.14 | 0.09 | 2.90 | 0.77 | CNFpred | | -----------------------------------------------------------------------PIQIQGIPTILSGRDMIGIAFT--------GSGKTLVFTLPVIMFCLEQEFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSP----------LLRCALCIGGMSVKEQMETIRHGVHMMVATPGRL--------MDLLQ------MVSLDICR-YLALDEADRMIDMFEGDIRTIFSYFK |
6 | 1vt4I | 0.16 | 0.15 | 4.91 | 0.57 | HHsearch-2 | | SKDGTLRLFWTLLSKQEVQKFVEEVLRINPSMRMYIEQRD-RLYNDNQVF---AK--------YNVSRLQPYLKLRQALLELRPAKNVLIDGVLSGKTWVACLSYKVQTVLEMLQKLLYQID----PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYELVQNAKAWAFNLSCKILTTRFKQVTDFLSAATTTHISLDHHSMTLTPDESLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGNCDKLTTIIESSL |
7 | 2q83A | 0.07 | 0.07 | 2.81 | 0.64 | Neff-PPAS | | ---------RPEKKALFSIFAQDYLAKKGNVPGILPNKKGSLYSKH--GSFLFVVYDWIEGRPFELT---VKQDLEFIKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQETWKLAEAEKE--DPFSQLYLQEIDGFIEDGLRIKDRLLQS--TYVPWTEQLKKSPNLCHYGTGNTLLGENEQIWIRDLRKIIPLLDTTGVWDDETFNVLNALTEEQKQVFIDLFPYELYDVIREKYVRKSALPKEELESAF |
8 | 1ztvA | 0.16 | 0.09 | 3.09 | 0.47 | HHsearch | | QGEWEEEFLESMATFKENVAYLQKIRHWFKDLPIAIELRNNSWYQPNFV-------------------------KQMLQFMKENQSLVIVDEPQIPTPVPFYPYVTNP------NLVLFRFHGRNAGWLANLYHYNTQEIADLSEAVLKMSQEAKEVGSNALQMQKVLNLSYDDL--NPKQ-LD-------------------------------------------------------------------------- |
9 | 1piiA2 | 0.15 | 0.08 | 2.62 | 0.72 | SP3 | | -----------------------------------------------------------------------ENRGQDAKAAYDAGYGGLIFVATS------------------------------------PRCVNVEQAQEVMAAIADVVDKAKVLSLAIDTLREALPAHVAIWKALVGETLPAREFQHVD---KYVLDN-GQGGSGQRFDWSLLNGAG--------GLGAD----NCVEAAQTGPGIKARLLASVF |
10 | 2q83A | 0.09 | 0.08 | 3.00 | 0.82 | PROSPECTOR2 | | LSAEDAKKLTELKKALFSIFAQDYLAKKGNVPGILPNKKGSLYSKHGS--FLFVVYDWIEGPFELTVKQDLEFIKGLADFHTASVGYQPPNGVPIFTKLGR--------WPNHYTKRCKQETWKLAEAEKEDPFSQLQEIDGFIEDGLRIKDRLLQS--TYVPWTEQLKKSPNLTLLGENEQ------------IWVIIPLLDTTGVWDDETFNVLNAAPLTEEQKQIDLFPYELYDVIREKYVRKERIKANALRQLI |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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