Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60
| | | |
| Seq | APNIDIIGSFFPVWMLCLAIAIALSFVVRVFLVRLKMESEVGPLALFYPCSVIFFTSLMWLIFF |
1 | 2vpyC2 | 0.12 | 0.12 | 4.38 | 1.07 | SPARKS-K | | RPLWNLMAGLFPLTALVLALGLAALVLAGASLLLALLYLFLLLGLGTFAPWAGLLAAAGLRALL |
2 | 1p49A1 | 0.12 | 0.11 | 3.84 | 1.93 | MUSTER | | ------FTTGFKRLVFLPLQIVGVTLLTLAALNCLGLLH-VPLGVFFSLLFLAALILTLFLGFL |
3 | 1p49A1 | 0.11 | 0.09 | 3.38 | 1.26 | Neff-PPAS | | ----------GFKRLVFLPLQIVGVTLLTLAALNCLGLLHVPLGVFFSLLFLAALILTLFLGFL |
4 | 5ezmA3 | 0.09 | 0.08 | 3.02 | 1.06 | SPARKS-K | | HIPNSFYRAYAVWVAVAFVVMLLGIAVARLLLRRGV------LPSVAVYAMGMYLGFTVALLGH |
5 | 6btmF | 0.12 | 0.11 | 3.84 | 0.59 | FFAS-3D | | ------FSTLFAWYVFAFVSGITSIALITIYLKSKGYLEYVNTSHIHDLAKFMFGISVFWTYL- |
6 | 3eamA | 0.16 | 0.16 | 5.22 | 0.25 | HHpred | | TPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPASITRASRIAFPVVFLLANIILAFLFF |
7 | 2xndJ | 0.09 | 0.09 | 3.53 | 1.43 | MUSTER | | DTAAKFIGATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAF |
8 | 5oqtA | 0.09 | 0.08 | 3.02 | 0.72 | CNFpred | | ------GPALVLSFILSGLACVFAALCYAEFASTVPVSGYTYSYATFGELIAWILGWDLILEYG |
9 | 4yeuA | 0.14 | 0.14 | 4.80 | 0.48 | HHsearch-2 | | TPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPAASIRASRIAFPVVFLLANIILAFLFF |
10 | 2xndJ | 0.09 | 0.09 | 3.53 | 1.03 | Neff-PPAS | | DTAAKFIGAGVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAF |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|