Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | IIKGRFNYTMVNIHQYPVSRTHFTLYQIGNYSTNEPYFATTELKDNLGNFEFKNLPLNLGTNATTYFVMYPSSLDFNLKPNRILIEFTDRGNGTVESKAFKNYFGREFFPSKDITYPEKLESISMDPFIEIALVHIAPRRSYFQVRNAGILQSGIIGNILSSRWKTAAVITVICLAIFPFIVEKFDPETTKAMKEDALRKQREK |
1 | 5ek8A | 0.10 | 0.09 | 3.24 | 0.71 | SPARKS-K | | KATGQLLFSD---TNKPLHNIELEVWDRDV-GTPSDYLGKGVTD-QNGRFEIYYDPEKAGFKDAPDLELRVIDNRVTFD---------SDNQPVYTNRIAYIIKGGDNFGTLTVPYWPYDPNSPFAR---IFMPNPEETPDDY------------SVGRKFQAYASANVLTPIKAKHTIANTLNPKEPSLTQIQADINLDREKP |
2 | 1nkgA3 | 0.08 | 0.03 | 1.16 | 0.69 | FFAS-3D | | -VAGTAS------GADSSMDWVVHWYNDAA--------QYWTYTSSSGSFTSPAMK-------PGTYTMVYYQGE--YAVATSSVTVSAGSTTTKNIS---------------------------------------------------------------------------------------------------------- |
3 | 4oq1A | 0.14 | 0.10 | 3.34 | 0.40 | HHpred | | TMTTKVKLIKVDQDHNRLEGVGFKLVSVARDVGEYRYSGRTLYTDKNGEIFVTNLPLG------NYRFKEVPLAGYAVTTLDTDVQLVDHQLVTITVVNQKLPRGNVDFMKVDGRTNTSLQGA----MFKVMKEESGHYTPVVTSGKDGRFR---------------------------------------------------- |
4 | 2i9iA | 0.13 | 0.12 | 4.24 | 0.69 | MUSTER | | --E-RMKTSSEHVVQAPQNHHVVGILTPRQVSDNKPYIDKQTIFEKRG-YQVLRFQDEKALNAQIFSVLDLKGWVGILEDLKMNLKDPNNPNLDDQSSGSVWFNFYE--PESNRVVHDFAVEVGTFQAMTYTYKHNNSG--------GLNSSNSIIHEYLEKEDAIHKILNRMYAVVMKKAVTELTKENIDKYREAIDRMKGFK |
5 | 3uv1A | 0.07 | 0.05 | 2.04 | 0.73 | CNFpred | | DHADKFERHV------LDFKGELAMRNIE-------ARGLKQMKRQDANVKGEE--------GIVKAHLLIGVHD---DIVSMEYDLAYKLHPTTHVISDIQD-----------------------FVVALSLEIPDEGNITMTSFEVRQFANVVNH-----DPIFGVLSDVLTAIFQDTVRKEMTKVLAPAFKRELEK----- |
6 | 1nkgA3 | 0.12 | 0.04 | 1.56 | 0.82 | HHsearch-2 | | KVAGTASGADSS----MD--WVVHWYNDA-------AQYWTYT-SSSGSFTSPAMKPG-------TYTMVYYQGEYAVA--TSSVTVSAGST----TT--KNISG--------------------------------------------------------------------------------------------------- |
7 | 3j8dA1 | 0.10 | 0.10 | 3.59 | 0.76 | Neff-PPAS | | ----VLTQSPASLAVSLGQRATISCRASESVDSQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSVETDDAATYYCQQNN--EDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHHKTSTSPIVKSFNR----- |
8 | 1nkgA3 | 0.11 | 0.04 | 1.43 | 1.06 | HHsearch | | KVAGTASGADSS----MD--WVVHWYNDAA-------QYWTYT-SSSGSFTSPAMKPG-------TYTMVYYQGEYAVA--TSSVTVSAGST----TTK--NISG--------------------------------------------------------------------------------------------------- |
9 | 2jadA | 0.09 | 0.08 | 3.19 | 0.80 | SP3 | | TLVNRIELNILGHKLEYNYNSHCVYIVADKQKNGIKVNFKIRHNIEDGSVQLADHPIGDGPVLL---------PDNHYLCYQSALSKDPNEKRD-HMVLLEFVTAAGITHGMHELYKSGSGMVSQETIKHVK--DLIAENEIFVASKTYCPYSHAALNTLFEKLKVVLVLQLNDMKEGADIQAALYEINNDDLQELRETGELEE |
10 | 1jwyb | 0.08 | 0.07 | 2.94 | 0.67 | PROSPECTOR2 | | DVFNTLGSDPLDLRDFLPRPLILQLTHLPIADDGS---------QTQEWGEFLHKPNDMFYDFSEIREEIIRDTDISAQPINLKIYSPHVVNKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVLMDKGTDAMEVLTGRVIPLTLGKSIRESLKSEILYFKYKSIANRSGTAYLSKTLNKLLMFHIRDKVKVSKMLS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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