Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | GFLSGVLSPGMRAITVGVDPETGGGGFVLPGDRVDLIVIFDVPDEDEVTGETTNLVVSETILQDIRILAVGQEVAIEGGGGDETLTEVAETVTLEVTPNQAQVVSVADQMGRLRLVLR |
1 | 3iibA1 | 0.09 | 0.08 | 3.23 | 0.72 | SPARKS-K | | LGGSIATPQGLSATIVRFDTAGSLNDKI-------AFIDAKTERHRDGKGYGQTASGRSRGAVAAAIIIRSIGTDHDRAHTGRYEEGVTAIPAAAISNPDADLINALKRDKEVVISLE |
2 | 3uxfA2 | 0.19 | 0.17 | 5.46 | 0.58 | FFAS-3D | | ------LSG----VDKQVTDKPAPG----SGRDITYTITTSIPKVDYPGGARIKRYEVVDRLDTPVVKIVGQNEVTLAETTDYAEGKDHNWATIQLTEEGRRKASEARYNGKLQVTLN |
3 | 3ja831 | 0.13 | 0.08 | 2.63 | 0.50 | HHpred | | -EMPEMAPAGQLPRSIDVILDDDLVDKTKPGDRVNVVGVFKSLGAGGMNQSNLIGFKTLILGNTVYPL-------------------------------------------------- |
4 | 4cfiA2 | 0.10 | 0.09 | 3.44 | 0.75 | MUSTER | | -----MVQTGLGTIKVAIDSSGAAWSSGSTGQETTQINVVSDGKGGFTFTDQNNQALSSTAVTAV--FGSSTAGTGTAASPSFQTLALSTSATSALSATDQANATAMVAQ--INAVNK |
5 | 4d94A | 0.08 | 0.05 | 2.01 | 0.69 | CNFpred | | -----------AYIKLELKS------PIKRNKLMRFMVTCTERM----------TFFVYYVMSKGNIIDAGFMRP---------NKQPKYLLQLNATEKMI-------PRAKILIATV |
6 | 3ja831 | 0.13 | 0.08 | 2.64 | 0.59 | HHsearch-2 | | QEMPEMAPAGQLPRSIDVILDDDLVDKTKPGDRVNVVGVFKSLGAGGMNQSNLIGFKTLILGNTVYPL-------------------------------------------------- |
7 | 1kanA1 | 0.11 | 0.10 | 3.64 | 0.77 | Neff-PPAS | | ERILDKYGDDVKAIGVY---GSLGRQTDGPYSDIEMMCVMSTEEAEFSHEWTTGEWKVEVNFYSEEIL--LDYASQVESDWPLTHGQFFSILPIYDSGGYLEKVYQTAKSV------- |
8 | 3ja831 | 0.13 | 0.08 | 2.64 | 0.61 | HHsearch | | QEMPEMAPAGQLPRSIDVILDDDLVDKTKPGDRVNVVGVFKSLGAGGMNQSNLIGFKTLILGNTVYPL-------------------------------------------------- |
9 | 3ja83 | 0.14 | 0.12 | 4.04 | 0.78 | SP3 | | --MPEMAPAGQRSIDVILDDDLV--DKTKPGDRVNVVGVFKSLGAGGMNQSNLIGFKTLILGNTVYPLHARSTGVAARQM---------------LTDFDIRNINKLSKKKDIFDILS |
10 | 3icuA | 0.10 | 0.10 | 3.75 | 0.51 | PROSPECTOR2 | | GAMDGAEAVWTAYLNVSWRVPHTGVGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQAVIFNFPGTRNEVIPMSHPGAVDIVAIMIGNLKGTKILQSIQRGQVTMVIE |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|