>PF16965 (403 residues) MSSTALWFAVVLSYVIQTRGFSHIQSRTFLSNLKAPAKATADAAAQAAQAAQESYGTKTL TVYLTFIYFASWLLVLPLSRLWKDDAKPLLPLENSIASNSSLSLDHDEDDEIDNVIDTVT VDNLLENEGKQEEFSLLSVATAKYVAKLSILAVLAVVNIFTYNMALSLSPAFDVALIENT SIFEIVTLLYGVCNISRKNYVFRNFFVMMVALIGILIVSYTKATCDLLAGKLSINQDTGE VNDPFLFDRLKGGLICGLGALTMGPFAVLWNRWFTAKGAMRTTLAQQSQHLGLIGCISML MLLPFLPALSTSNDYISLLYTDKSFWLTIMGSIIFGILPNLLSLIQLNRTAPPEYITTCF LGIIIFMGLADWVTEPTQTMIVRWEVIGYLMLAISCVTLSYTL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MSSTALWFAVVLSYVIQTRGFSHIQSRTFLSNLKAPAKATADAAAQAAQAAQESYGTKTLTVYLTFIYFASWLLVLPLSRLWKDDAKPLLPLENSIASNSSLSLDHDEDDEIDNVIDTVTVDNLLENEGKQEEFSLLSVATAKYVAKLSILAVLAVVNIFTYNMALSLSPAFDVALIENTSIFEIVTLLYGVCNISRKNYVFRNFFVMMVALIGILIVSYTKATCDLLAGKLSINQDTGEVNDPFLFDRLKGGLICGLGALTMGPFAVLWNRWFTAKGAMRTTLAQQSQHLGLIGCISMLMLLPFLPALSTSNDYISLLYTDKSFWLTIMGSIIFGILPNLLSLIQLNRTAPPEYITTCFLGIIIFMGLADWVTEPTQTMIVRWEVIGYLMLAISCVTLSYTL | |||||||||||||||||||
1 | 6oh2A | 0.13 | 0.10 | 3.35 | 2.12 | SPARKS-K | ----YCLTVMTLVAAAYTVALRYTRTT---------------------------AEELYFS--TTAVCITEVIKLLISVGLLAKETGS--------------------LGRFKASLSENV-----------LGSP-------KELAKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQL--KIPCTALCTVLMLNRTLSK-LQWISVFMLCGGVTLVQWKP------------AVVVAQ-------NPLLGFGAIAIAVLCSGFAGVYFEKVLKSSDTSLWVRNIQMYLSGIVVTLAGTYLSDGAEIQEKGFFYGYT---------YYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVLLFGLQI--TLSFALGALLVCVSIYLYGLPR | |||||||||||||
2 | 6i1rA | 0.12 | 0.09 | 3.16 | 2.31 | FFAS-3D | MQWYLVAALLTILTSSQGILTTLSQSN----------------------------YDYATIPFLAELF----KLSVSGFFLWKECRTSP---------------------------------------------SVRMTKEWRSVRLYVVPSVIYLIHNNVQFATLTYVDPSTYQIMGNLKIVTTGILFRL---VLKRKLSNIQWMAIVLLAVGTTTSQVKG--------------CGDSPCDSLFSAPLEGYLLGILSACLSALAGVYTEYLMKKNN---DSLYWQNVQLYTFGVIFNMGWLIYGDFKAGFELGPW-WQRLFNGYSITTWMVVFNLGSTGLLVSWLMKYSDNIVKVYSTSMAMLLTMVLSIYLFS--VKATIQLFLGIIICIISLQMYFMP- | |||||||||||||
3 | 5y78A | 0.10 | 0.07 | 2.68 | 2.10 | HHpred | ----------------------------------------------------PTLVHTLKVGFYFFLWYFFNFIFNIANKRTLNMW-KYPWVL----------------STIQLGVGALY---CTFLWV--LGLRTKPNVSKKLIKALIWPSLGHTLGHAATCMSFSLVAISFTHVVKSAEPVF--GAVGSALVLGEFFHP-LTYLTLVPIVSGVALSAATELT-----------------------FTWTGFITAMISNVAFVTRNITSKFTMVDFKNELIAQNT-YALITI---ISFFMELPFALLMEGFPPVAIAGVSKAKLFGSIMFCSLFYHLYN-EVSYLCLDNVSPVSFSIGNTIKRVIIIFGSILVFRTP--VTRLNFIGSTIAIIGTMLYSLAK | |||||||||||||
4 | 6oh2A | 0.13 | 0.10 | 3.42 | 1.56 | MUSTER | ----YCLTVMTLVAAAYTVALRYTRTTAEELYFS--------------------------TTAVCITEVIKLLISVGLLAKETG--------------------------------SLGRFKASLSENVLGS---------PKELAKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLML----RTLSKLQWISVFMLCGGVTLVQ-------------------WKPAVVVAQNPLLGFGAIAIAVLCSGFAGVYFEKVLKSSDTS---LWVRNIQMYLSGIVVTLAGTYLSDGAEIQEKGFFYGYT------YYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVLLFGLQ--ITLSFALGALLVCVSIYLYGLPR | |||||||||||||
5 | 5y78A | 0.10 | 0.07 | 2.73 | 1.80 | CNFpred | FYFFLWYFFNFIFNIANKRTLNMWK-------------------------------------YPWVLSTIQLGVGALYCTFLWVLG-----------------------------------------------LRTKPNVSKKLIKALIWPSLGHTLGHAATCMSFSLVAISFTHVVKSAEPVFGA--VGSALVLGEFFHP-LTYLTLVPIVSGVALSAATE-----------------------LTFTWTGFITAMISNVAFVTRNITSKFTMVDFKNEKT--LIAQNTYALITIISFFMELPFALLMEGFPPLVSAIGVSKAKLFGSIMFCSLFYHLYNEVSYLCLDNVSPVSFSIGNTIKRVIIIFGSILVFRT--PVTRLNFIGSTIAIIGTMLYSLAK | |||||||||||||
6 | 5y78A | 0.10 | 0.07 | 2.68 | 2.44 | HHsearch-2 | ---------------------------------------------------SPTLVHTLKVGFYFFLWYFFNFIFNIANKRTLNM-WKYPWV----------------LSTIQLGVGALY---CTFLWV--LGLRTKPNVSKKLIKALIWPSLGHTLGHAATCMSFSLVAISFTHVVKSAEPVF--GAVGSALVLGEFFHP-LTYLTLVPIVSGVALSAATELT-----------------------FTWTGFITAMISNVAFVTRNITSKFTMVDFKNELIAQNT-YALITI---ISFFMELPFALLMEGFPPVAIAGVSKAKLFGSIMFCSLFYHLYN-EVSYLCLDNVSPVSFSIGNTIKRVIIIFGSILVFRTP--VTRLNFIGSTIAIIGTMLYSLAK | |||||||||||||
7 | 6oh2A | 0.14 | 0.10 | 3.56 | 2.02 | Neff-PPAS | ----YCLTVMTLVAAAYTVALRYTRTTA---------------------------EELYFSTTAVCITEVIKLLISVGLLAKETGSLGRFKASLSENVLGS----------------------------------------PKELAKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLN---RTLSKLQWISVFMLCGGVTLVQWKP-------------------AVVVAQNPLLGFGAIAIAVLCSGFAGVYFEKVLKS---SDTSLWVRNIQMYLSGIVVTLAGTYLSDGAEIQEKGFFYGYT------YYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVLLFGLQIT--LSFALGALLVCVSIYLYGLPR | |||||||||||||
8 | 5y78A | 0.10 | 0.07 | 2.68 | 3.50 | HHsearch | ---------------------------------------------------SPTLVHTLKVGFYFFLWYFFNFIFNIANKRTLNM-WKYPWV----------------LSTIQLGVGALY---CTFLWVL--GLRTKPNVSKKLIKALIWPSLGHTLGHAATCMSFSLVAISFTHVVKSAEPVF--GAVGSALVLGEFFHP-LTYLTLVPIVSGVALSAATELT-----------------------FTWTGFITAMISNVAFVTRNITSKFTMVDFKNELIAQNT-YALITI---ISFFMELPFALLMEGFPPVAIAGVSKAKLFGSIMFCSLFYHLYN-EVSYLCLDNVSPVSFSIGNTIKRVIIIFGSILVFRTP--VTRLNFIGSTIAIIGTMLYSLA- | |||||||||||||
9 | 5y78A | 0.10 | 0.07 | 2.61 | 2.07 | PROSPECTOR2 | SPTLFYFFLWYFFNFIFNIANKRTLNMWK-----------------------------YPWVLSTIQLGVGALYCTFLWV---------------------------------------------------LGLRTKPNVSKKLIKALIWPSLGHTLGHAATCMSFSLVAISFTHVVKSAEPVF--GAVGSALVLGEFFHP-LTYLTLVPIVSGVALSAATELT-----------------------FTWTGFITAMISNVAFVTRNITSKFTMVDFKNEKT-LIAQNTYALITIISFFMELPFALLMEGFPPLVSAIAGVSKAKLFGSIMFCSLFYHLYNEVSYLCLDNVSPVSFSIGNTIKRVIIIFGSILVFRTP--VTRLNFIGSTIAIIGTMLYSLLP | |||||||||||||
10 | 6i1rA | 0.10 | 0.06 | 2.27 | 2.17 | SAM | ------------------------------------------------------------------------------------------------------------------------------WKECRTSPSVRMTKEWRSVRLYVVPSVIYLIHNNVQFATLTYVDPSTYQIMGNLKIVT--TGILFRLVLKRKLSN-IQWMAIVLLAVGTTTSQVKGCGDSS--------------------APLEGYLLGILSACLSALAGVYTEYLMKKNN-S--LYWQ-NVQLYT---FGVIFNMGWLIYGDFKA-F---ELGLFNGYSITTWMVVFNLGSTGLLVSWLMKYSDNIVKVYSTSMAMLLTMVLSIYLFSVK--ATIQLFLGIIICIISLQMYFM-- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |