Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | NIREQALRETATMLGARGALAWRAVHIDAALEKQATYLDHLFDFNQLLLKHNVLPPVIVESQANLNLADDDTIRTADKTYKIVADARFVTAPPTWRSYLWLSYKKPDLPSATLLPKDKSETQVWNFYLKQGWQNGLQQANEIFAANLNRLKRDYLGMVLYRKLLAQGMITSPVVAKADLGVTGDANQIRINDEIMRITAQSALQPDSSHWNP |
1 | 4am2A | 0.07 | 0.05 | 1.94 | 0.81 | SPARKS-K | | KGDQKVIEYLNRGLRSELTAVSQYWLHYRMLEDWAKKWRAESIFVERILFLE------------GLPNLQT----------------------------LDPLRIGQTVKESDLAAEREARALYQEGAAYAASVGDFPSKNLFEELMGDEEHHIDFLETQLDLVSKLGLELYAQHHIGKLDD------------------------------ |
2 | 1ciiA2 | 0.13 | 0.10 | 3.42 | 0.71 | FFAS-3D | | --NDRAISEARNKL---SSVTESLNTARNALTRAEQQLTQQKNTDGKTIVSPEKFPGRSSTNDSIVVSGDP---RFAGTIKITTSAVIDNRSHSGLDYKRNILNDRNPVVTEDVEGDNAEVAEWDKLRQRDARNKITSAESAVNSARNNLSARTNEQKHANDALNA---------------------------------------------- |
3 | 5j0kA | 0.24 | 0.06 | 1.76 | 0.26 | HHpred | | -TRTEIIRELERSLREQEELAKRLKELLRELERLQREGSSDEDVRELLREI----------------------------------------------------------------------------------------------------------------------------------------------------------------- |
4 | 1st6A | 0.15 | 0.14 | 4.77 | 0.66 | MUSTER | | DAGEQAIRQILDEAGKAGELCKERREILGTCKTLGQMTDQL---ADLRARGQGATP------MAMQKAQQVSQGLDLLTAKVENAARKLEAMTNSKQAIAKKIDAAQNWLADPN-GGSEGEEHIRGIMSEARKVAELCEEPERDDILRSLGEISALTAKLSDLRRHGKGDSPEARALAKQIATSLQNLKTNRAVANTRPVKAAVHQAQRWNP |
5 | 4ui9I | 0.09 | 0.06 | 2.15 | 0.63 | CNFpred | | YSFLPEVTRMARKFTHISALLQYINLSLTCMCEAWEEILMQMRLTKFVQEKNTTTSVQDEFMHLL---------------------LWGKASAELQTLLMNQL-------------TVKGLKKLGQSIESSYSSIQKLVISHLQSGSESLLSELKGMASWKQKYE----------------------------------------------- |
6 | 2pffB | 0.16 | 0.14 | 4.70 | 0.69 | HHsearch-2 | | GMGMD--------------LYKTSKAAQDVWNRADNHFKDTYGFSILDIVNPVIHFGGEKGKNYSAMIFETIVDGKLKTEKIFKEINEHSTS-----YTFRS-------EKGLLSATQFLTLMEKAAFEDLKSKGLIPADATFAAALASLIESLVEVVFYRGMTMQELSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV |
7 | 5cwmA | 0.11 | 0.10 | 3.79 | 0.77 | Neff-PPAS | | -KEAEELLRQAKEKGSEEDLEKALRTAEEAAREAKKVLEQAEKEGDPEVALRAVELVVRVAELLLRIAKESG--SEEALERALRVAEEAARLAKRVLELAEKQGDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQPEVARRAVELVKRVAELLERIARESGSEEAKERAERVREEAELQERVKELRE |
8 | 5j0kA | 0.23 | 0.08 | 2.51 | 0.29 | HHsearch | | -TRTEIIRELERSLREQEELAKRLKELLRELERLQREGSSDEDVRELLREIKEL---VEEIEKLARE---Q-------------------------KYLVEELKRQ---------------------------------------------------------------------------------------------------------- |
9 | 5d1rA | 0.12 | 0.12 | 4.14 | 0.79 | SP3 | | EQIEAKIVELGRRQLLDHGAAGSLRAIARNLGMVSSAVYRYVSLTLLLVDAYSD--LADTVDRARDDTVADSWS--DDVIAIARAGWAVTNPARWALLYGSPVPGYHAPPDRTAGVATRVVGAFFDAIAAGIATGDQPMSSDFEKIRQEFDDRVVTKCFLLWAGVVGAISLEVFGQYGADMLTDPGVVF--DAQTRVAVLAEHHHHHH---- |
10 | 3tnfB | 0.07 | 0.07 | 2.75 | 0.73 | PROSPECTOR2 | | LDELSEINEKMEAFSKDSEKLTQLMKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYV-------NEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMPKENEEATKLLHKHNGLNLKLANLQDMLAVHRKEVIGKDQQLFNLGGIHKEQKILEKDGKFYLLKQGEDIKDSPEKQSK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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