Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | MEKIKKINKIFLSFEVIPFAMMILLAFPPIIASLINNRLQYGRDFSDRVSFYCYISIMVAYAITILLEIIFYFILLKNYQYDQSNIELANRVKVTKVLSILYMIPGLYAIPFYFRFLHVRSFRENKKSGQPAYHFWEFFIKPNRKPIELKDFFIKNR |
1 | 5cwfA | 0.12 | 0.12 | 4.26 | 0.72 | SPARKS-K | | SDEMKKVMEALKKAVELAKKDEVAREIERAAKEIVEALRENNSDEMAKVMLALAKAVLLAAKNEVAREIARAAAEIVEALRENNSDEMAKVMLALAKAVLLAAKNNDEVAREIARAAIVEALRENN-SDEMAKKMLELAKRKNNDDETAREIARQAA |
2 | 4xydA1 | 0.10 | 0.08 | 3.03 | 0.88 | FFAS-3D | | MK--YQSQSIALVYFAVALGLFAIQVSGGLLLGWIYVSPNFLSEILPFNIVRMLHTNSLIVWLLLGFMGAAYFVIPEESEREIHSPLLAYLQLAIMVLGTLGVVVTIVVAALIFMYNISMTVLQGRK------------------------------ |
3 | 3vw7A | 0.10 | 0.08 | 3.03 | 0.35 | HHpred | | ------------SFTCLAIWALAIAGVVPLLLKE---QTIQVPVLSETYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSANIANRSKKSRALFLSAAVFCIFIICFGPTNVLLIAHYSFLSHTSTTEAAYFAYLLCV----------------- |
4 | 5tjvA1 | 0.13 | 0.13 | 4.41 | 0.66 | MUSTER | | L-AYKRIRPKAVVAFCLMWTIAIVIAVLPLLGWNCEKLQSVCSDIFPHIDETYLMFWIGVTSVLLLFIVYAYMYILWKARAMSFSDQARMDIRLAKTLVLILVVLIICWGPLLAIMVYDVFGKMNKLIKT-AFCSMLCLLNSN--PIDLRHAFRSMF |
5 | 4eslA | 0.08 | 0.06 | 2.50 | 0.75 | CNFpred | | ---------FYLGASVFVLSTWVSIYIVLDLWRRWKAANPG----VTPLVTYMAVVFWLMWFLASLGLVLEAVLFLLPWS-EGVDPLVARTLWFGHPIVYFWLLPAYAIIYTILPKQAGGKLVSDP---MARLAFLLFLL----------------- |
6 | 5tj5A | 0.23 | 0.22 | 6.99 | 0.79 | HHsearch-2 | | NEKINKRGDMAFTGRYIILLMGVFSMTYSYFFSLANHLGNFIPGLLFMQGIFGYLSVCIVYKWGLLNMLINMFL--SPGTIDDELYPHQAKVQVFLLLMALVCIPWLLVKPLHFKFIHTIEFCLNCVSHQLSLHWVESMSK-PYEPFAFEYKDMEV- |
7 | 4u5aA | 0.13 | 0.12 | 4.20 | 0.63 | Neff-PPAS | | -------NNIIEEFDKLSDDFSNDINATKQTIKDLFLDIEASDDVVKLLSKYSFVPEEKLNIIDGILRSFIENNKTHVINSSNAYIYIQKEKIKNVCNFILKKLNSLIQINELNKSHIILKYG----KGEAKKGVLESIKNNDDISKNLKSELLKYR |
8 | 3vw7A | 0.08 | 0.07 | 2.82 | 0.57 | HHsearch | | MRTLGRASFT-----CLAIWALAIAGVVPLLL---KEQTIQVPVLSETYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSANIANRSKKSRALFLSAAVFCIFIICFGPTNVLLI-AHYSFLSHSTTEAAYFAYLLCVSCCIDPLI-YYYASSE- |
9 | 6mjpG1 | 0.07 | 0.06 | 2.61 | 0.59 | SP3 | | KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDVEMFFPMAALLGALIGLGALASSSLVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWGAPQAQKM-----ARDMRAFATSGGAI------------ |
10 | 5cwmA | 0.13 | 0.13 | 4.61 | 0.69 | PROSPECTOR2 | | LKRVEKLVKEAEELEDLEKALRTAEEAAREAKKVLEQAEKEGDPEVALRAVELVVRVAELRALRVAEEAARLAKRVLELAEKQGDPEVALRAVELVVRVAELLLRIALRVAEEAARLAKRVLELAEKQGDPEVARRAVEIARESGSEEAKERALRER |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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