Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | EPAPPYHSPEDSREHGDRNGCIIKLIRSASSTGQKNFSAPPAQCPPSTSWQQQCHPRQGHGTSPVGDHGSLVRIPPPPTHERSLSAC |
1 | 6f1tg2 | 0.12 | 0.11 | 4.09 | 1.03 | SPARKS-K | | SSQYPELLVASYNNNEDAPHEPDGVALVW-NMKYKKTTPEYVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLWKRTPVQRTPLSAA |
2 | 2mk0A | 0.19 | 0.18 | 5.92 | 1.07 | MUSTER | | EPS---SQPSDCGEVIEEDACFLPKSDSARPPDCTAVGRPDCNVLPFPNNIGCPSPFECSPDNPM-FTPSPDGSPPNCSPTMLPSPS |
3 | 3cw18 | 0.05 | 0.05 | 2.18 | 1.21 | Neff-PPAS | | APRDPIPYLPRE----ERMERKRREKIERRQQEVETELKMWKTLFVARVNYDTTESKLRREFEVYGPIKR-IHMVYSKRSGKPRGYA |
4 | 3bogA | 0.09 | 0.08 | 3.05 | 0.99 | SPARKS-K | | GADGAHGVGCPGTAGAAGSVGGPGCDGGHGG----NGGNGNPGCAGGVGGAGGASGGTGVGRGGKGGSGT-------PKGADGAPGA |
5 | 1nwyS | 0.16 | 0.15 | 4.95 | 0.38 | FFAS-3D | | -PRPSAGSHHNDKKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMT---NPQGGQEQRELAL--HASKVALVDPETGKATRVR- |
6 | 2v46Y | 0.21 | 0.13 | 4.02 | 0.24 | HHpred | | -------------------------LNQIATVTAPD--PR---TLVVQSWDQNALRDSDLGLNPSNK-GDALYINIPPLEERRK--- |
7 | 2nbiA2 | 0.17 | 0.17 | 5.66 | 1.05 | MUSTER | | PTGPPSSQPSECADVLELDTCFLPFDDSSRPPDCTDPSVNRPDCDAIDFTCPTCCPTQCRPDNPMSPDGSPPVCSPTMMPSPLPSPT |
8 | 2c1qA | 0.26 | 0.06 | 1.77 | 0.56 | CNFpred | | -----------------------------------------RKCELQGLWRNEL--------------GSNMTI------------- |
9 | 3e0mC1 | 0.18 | 0.11 | 3.75 | 0.53 | HHsearch-2 | | DPGIYYQDEADLPAEQERRKIAVEVE----QL--RHYLAED---------YHQDYLR----KNPSGYDVTDADKP------------ |
10 | 1r70B3 | 0.16 | 0.14 | 4.61 | 1.20 | Neff-PPAS | | SPTSPKVFPLSLDSTPQDGNVVVACL----------VQGFFPQEPLSVTWSESGQNVTARNFPPSQDASSQLTLPATQCPDGKSVTC |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|