Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | EKLPIKRSKGSLGSLNMLTGKNNELGKTSGASANGVYSKSAESASEGSSEGSDANSQSDSQLKSGCRQDSLEAETSQNGSTCHAPQNGGPNTPHAMVNQTMAIMPISAPGAPGGVPGPTTNLNIGMDYWGAPTSSTIP |
1 | 3bogA | 0.12 | 0.07 | 2.31 | 1.19 | SPARKS-K | | DGAHGVGCPGTAGA-AGSVGGPGCDGGHGGNGGNGNPGCAGGVGGAGGASGGTGVGGRG-GKGGSGTPKGADGAPGAP------------------------------------------------------------ |
2 | 4k0mC | 0.12 | 0.12 | 4.33 | 1.05 | MUSTER | | PRRSDQNVRGTLGKLAIAKGEKIKEAEEAGADGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
3 | 3jbmA | 0.06 | 0.06 | 2.55 | 1.57 | Neff-PPAS | | --SQAVLPAGTGTDGYVVVDATIVPDLLPRLGHAARIPMCPANTGGGYVAGFLPDPTDNDHTFDALQATRGAVVAKWWESRTVRPQYTRTLSGKEQRLTSPGRLILLCVGNNTDVVNVSVLCRWSVRLSVPSLETPEE |
4 | 4k0mC | 0.11 | 0.11 | 3.93 | 1.02 | PROSPECTOR2 | | KVYTIEKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
5 | 3boiA | 0.16 | 0.09 | 3.13 | 1.16 | SPARKS-K | | -------CKGADGA----HGVNGCPGTAGAAGSVGGPGCDGGHGGNG-----GNGNPGCAGGVGGAGGASGGTGVGGRGGKGGSGTPKGADGAPGAP----------------------------------------- |
6 | 3tb8A | 0.18 | 0.15 | 4.97 | 0.36 | FFAS-3D | | -----KWSKSSVIGWPAV----RERMRRAEPAADGVGAASRDLEKHGAITSSNTAANNAACA---------WLEAQEEEKVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDI-LDLWIYHTQGYFP |
7 | 2ypwA | 0.13 | 0.07 | 2.25 | 0.22 | HHpred | | -----------------------------------------------PYDYRIVVNPVNVDAVAGVHIVVAPDETYITHA--FG--DS---ESRTFAHK-MNHFF-----VKPKQAMSDTNLVIVTDK---------- |
8 | 3pmqA3 | 0.08 | 0.08 | 3.15 | 1.00 | MUSTER | | GDQQLNIHGARNDLAGQNPNMLADATATNPSMTSFDFKQLIHGLHSSQFAGFEDLNYPGNIGNNDSTGISTVALPLNAAVQPLALNNGTFTSPISSDATQNHMRQQGAVFAGTKADATAGTETGQGTVADVLKVHPIN |
9 | 2pffB | 0.20 | 0.20 | 6.25 | 0.67 | HHsearch-2 | | EKGKRIRENYSAMIFEIVDGKLK-TEKIF-KEINE-HSTSYTFRSEKLSATQF--TQPALDLKSKGGHSLGEYAASLADVMYRGMTMQVAVPRDELSNYGMAINPQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA |
10 | 4k0mC | 0.11 | 0.11 | 3.93 | 1.55 | Neff-PPAS | | -RRSDQNVRGTVSLPHGLIAKGEKIKEAEEAGADEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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