Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | NHPFMWVAAGLAVAVVVVQAVIFFTKSYKAGKEIGLTDKQMKSAVKSSAISSIGPSLVILIGMVSLIVVMGGPISWMRLSFIGSVTYELMAAGFGADAMGVTLGKAGMNNVVYTNAVWTMVLGSLGWLIFTFLFTHKMDKLNNVLSNGKKAMVPIISAGAMLGSFAYFNADRILKFDNGSVACISGLIIMAVLTYLNNEKGVKWLKDWALSIAMFGGM |
1 | 5ztkA | 0.15 | 0.13 | 4.50 | 1.06 | FFAS-3D | | --EFIDHLLTMGVGVHFAALIFFLVVSQF-------VAPKYRIATALSCIVMVSAGLILNSQAVMWTDMATIPCLLLQLLIVLSTATWLILAAWGMIITGY-VGQLYEVDDIAQLMIWG-AVSTAFFVVMNWIVGTKIFKNRATMLGGTDSTITKVFWLMMFAWTLYPIAYLVPAFMNNADGVVLRQLLFTIADISSKVI-------YGLMITYIA-- |
2 | 5gpjA | 0.12 | 0.11 | 3.77 | 1.08 | CNFpred | | FSTVSFLLGGVTSLVSGFLGMKIATYANARTTLEAGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGAD-PRNPAVIADNVGDNVGDIAGMGSDLFGS----------------YAESSCAALVVASISSFGLNHETAMLYPLIVSSVGILVCLLTTLFATDF-EPALKKQLVISTVLMTI |
3 | 4od4A | 0.07 | 0.07 | 2.96 | 0.99 | SPARKS-K | | FTLADAILMAAAVVGLRMAGMAYNNIALDIDRLNPVSLREAWALVAAGSAIYFASAALLALLLSPLVLAIALTYPHAKRLHLHLGIVLGSVVFGGAVAASGDEASS----LGEVLRSVPWLYVAAVSLWVAGFDTIYSIMDIDFDRSHGKGALAASLAMHAAAVALFIAGVEAYGLAIATVSTALTALVIILVQAMAWLGRVKESFNLNVPIIIGAGI |
4 | 6btmC | 0.05 | 0.05 | 2.29 | 1.06 | FFAS-3D | | NSPLLWDVFAISTYLSVSLVFWWTGLLPDFAMLRDSGRAKDWQRFEEVSLVLAGLATPLVLSVHTIVSMDFAPPYFVAGAVFSGFAMVNTLLIVMRKVSNLEAYITLQHIELMNIIIMITGSIVGVAYITELFVAEYEQYAFLNRATGP--YWWAYWSMMTCNVFSPQFMWFKKLRTSIMFSFIISIVVNIGM----------WFERFVI---IVTSL |
5 | 5a1sA | 0.10 | 0.10 | 3.55 | 0.30 | HHpred | | -------GGAPVMIFLVAAYFVYEIDAISLGAILSVNRKLLLKSLLGYIPTILAGIVGASLFGIVIGLCFGIP-VDRI-MMLYVLPIMAGASEIYHSVTGRS--REEYYSTAIAILTIANIFAIIFAALLDMVGKKYTWLLVRASKDGQRETAVGMVLSTTCFLLAYVVAKKILPIHYFAWMVLIVAALNAS-GLCSPEAGAKRLSDFLWVLMVGVGV |
6 | 4ikvA | 0.09 | 0.09 | 3.46 | 0.85 | MUSTER | | NFHLGFGLAAVGMFLGLVVFVATRKKNLGLAG--TYVPNPLTPAEKKKAAAIMAVGAVVIAVLLAILIPNGW-FTVETFISLVGILGIIIPIIYFVVMYRSPKTTAEERVIAYIPLFVASAMFWAIQEQGSTILANYADKRTQLDVAGIHSPAWFQSLNPLFIIILAPVFAWMWVPQKFALGLLFAGLSFIVILVPGHLSGGGLVHPIWLVLSYFIVV |
7 | 3rkoB | 0.12 | 0.12 | 4.18 | 1.07 | CNFpred | | FFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCS-TDPKNGAAAMKAFVVTRVGDVFLAFALFILYNEL-GTLNFREMV-LMWATLMLLGGAVGKSAQLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLH----LVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAA-IFHLMTHAFFKALLFLA |
8 | 4a01A | 0.15 | 0.15 | 4.93 | 0.51 | HHsearch-2 | | LPDLGTELIPVCAVIGIAFALFQWLLVSKVNLEKGV-GKAFITAFRSGAVMGFLAANGLL-VLYIAINLFKIYYDWGGLAIVGGGIY-TKAADVGADLVGKERNIPEMGSDLFGSSCAALVVAILVCLLT-TLFATDFFEI---KAVKEILKKQLVISTVLMTIGVAVVSFVALPTWQLFLCVAVGLWAGLIIGFVTEYNAYSPVQDVAAATNVIFGL |
9 | 4od4A | 0.07 | 0.07 | 2.98 | 0.95 | Neff-PPAS | | TLADAILMAAAVVGLRMAGMAYNNIADLDIDRLNPVSLREAWALVAAGSAIYFASAALYALLLSPLVLAIALTYPHAKRLHPLPHLHLGIVLGSVVFGGAVAASGDEASSLGEVLRSVPWLYVAAVSLWVAGFDTIYSIMDIDFDRSHKGALAASLAMHAAAVALFIAGVEAYGLGAIATVSTALTALVIILVQAMAWLGRVKESFNLNLAVPIIIGA |
10 | 1mw7A1 | 0.10 | 0.02 | 0.85 | 0.50 | HHsearch | | -----KVFPLAKAITLAAKTNAKLRTAILNAKAQNMPKDNIDAAIKRASSKE--GNL----------------------------------------------------------------------------------------------------------------------------------------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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