Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | IASDPWKIARYRELLRLRDRWIEDGRLDRDSEAYARFCNRLMLIPEHTWGLNNSVYLVDFVNYSSADLAAARARDIVEDNTRKKFDYLCQQANGTRSYSHYESSWQEQRDYLEEALQSLPAALAAEARTELDRMSPQHTVLNSEPVQPQPIETNELYELGQFQVSFAADGSINRLMDRSGKAWAGEHQRLGTYMYETFGQENYDRFFKEYMTNLDIHHGWADNDFGKPGIEYVKPRPEHQRYTASLRTLHLERHADYDIVTAEMKLPEVLSNQYGAPRQINVFYSFHANEPV |
1 | 4lq8A | 0.13 | 0.11 | 3.78 | 0.77 | SPARKS-K | | ------------EADDGFIVTSNISPDSQTSDPITKAVRETII------------------QPQKDNLIEQILKDLTDRDLAEQKRKEIEEEKKDKTLSTFFGN-PANREFIDKALPELKKKLESIEIAGYKNVHNTFSAASGYPGGFKPVQWENHVDLRATVVKNDAGDELCTLNETKPFTLAKQDGTQVQISYREID----------FPIKLDQADGSVALKADGTKPSKDK---------AVYFTAHYEEGPNGKPQLKEISSP-KPLKFAGAIAYIEHIYTLAVTRGK |
2 | 4tkoB | 0.09 | 0.08 | 2.87 | 0.64 | FFAS-3D | | MSALLEKKKALEIKIQKISLSAKKLKVESLKKKREALREKLLQVEEKI-------------KLVKLDWERYKSLQKGLIPRRKFEEVDTNLKVLLHEREYLEKSIQEINTEIKRAKKGI--ENARNEFKTIEELKKELSSLEEEIKSLKERIKTAEQKIKDTVLIAPFDGVVAKRFISRGD-VVRAGQPAFALVEVLLEETKLKGV--------------------KVGNKAYVDAYPDILFEGVVEEI---SPVQRIPVKIKITKGDLSLLRVGMGGEVEIR--------- |
3 | 5jm0A | 0.11 | 0.08 | 2.74 | 0.48 | HHpred | | -TSQAQTKKLMRLSEIKLHDLEWIAAKKYPSKQINELWENVLLCQFHDVLPCIEMV---YKYEAVPMLHNVVK---------------------------------ECTSLIDKTVQFLQSQSK--------ADLVEMRTLG--------YDDYIVLANGKLKVIICKTGVITSITDELGVEYLD----FV--IYDDK------------------PLGWQAWDTELYSVNQYKYV-------TKPKKVQVSCNKEKCAVEVIFQISKCVISNATKLSKVDISTTVNWDA-- |
4 | 2yjnA | 0.12 | 0.10 | 3.65 | 0.67 | MUSTER | | FSSMAS-KSHLFGLVPLAWAFRAAG-HE--SPALTEDITAA--------GLTAVPVGTDVD--LVDFMTHAGHDIIDYVRSLDFSERDPATLT----WEHLLGMQTVLTPTFYAL--MSPDTLIEGMVSFCRKWRPD-----WEPLTFAAPIAAAVTGT---HARLLWGPDITTRARQGLLPDQPEEHREDPL------AEWLTWTLEKYGGPAFDEEVVVGQWTIDPAPAAIRLDTGLKTVGMRYVDYWLHDEPERRRVCLTLVSIEELLGAVGDVD-AEIIATFDAQQLE |
5 | 2wyhA | 0.14 | 0.09 | 3.15 | 0.73 | CNFpred | | -----RQLENITEPLAAMAYEVTSTY---PHDQLRYAWKTLMQNHPHDSICGCS----------------------------------------------VDSVHREMMTRFEKAYEVGHYLAKEAAKQIADAIDTRDFPM----------------DSQPFVLFNTSGHSKTSVAE----------LSLTWKKYHF-FPKEVYQEAQEYLARLSQSFQIIDTS--------GQVRPEAEILGTSIAFDYDPYFAIKVRLRLPITLPA------MSWKTLALKLGN------ |
6 | 5jm0A | 0.13 | 0.11 | 3.68 | 0.96 | HHsearch-2 | | GGGGPTE--EMLQKMRRIRSMNNNVIPQVG-ITVDEFYDDILKHDLPTWSGELYFEFHR-GTYTSAQTKKLRLSIKLH--DLEWIAAKTSVLSYKYPSKQINELWENVLVYLHNVVKECT-SLIDKTVQFLQSQSVEMRTLG--------YDDYIVLANGKLKVIICKTGVITSITDELGVEYLD----FV--IYDDK------------------PLGWQAWDTELYSVNQYKYV-------TKPKKVQVSCTKEKCAVEVIFQIS--------EKCKIKSVISLNATKLK |
7 | 1iu4A | 0.08 | 0.07 | 2.76 | 0.83 | Neff-PPAS | | -------VNNYIRKWQQVYSHRDGRKQQMTEEQREWLSYGCVGVTWVNSGQYPTNRLA-FASFDEDRFKNELKNGRPRSGETRAEFEGRVAKES----FDEEKGFQRAREVASVMNRALENHDESAYLDNLKKELANGNDALRNEDARSPF--------------YSALRNTPSFKERNGGNHDPSRMKAVIYSKHFWSDKRKYGDPDAFRPAPGTGLVDMSRDRNIPRSPTSPGEADADKTVWTHGNHYHAPNGSLGAMHVYESKFRNWSEGYSDFDRGAYVITFIPKSWN |
8 | 2wyhA2 | 0.17 | 0.07 | 2.15 | 0.90 | HHsearch | | ------------------------------------------------------------------------------------------------------------------------------------------------TV-SLYDDSNQCLENGFLKVMIQTDGRL-TITDKSGLIYQ----DLL--RFEDC------------------GDIGNEYISRQPNHDQPFY---AD-QG--TIKLNISNTAQVAELEIQQTFPISADKQARRELTLTTLIRMEKNNP- |
9 | 3ob8A2 | 0.12 | 0.05 | 1.81 | 0.89 | SP3 | | ------------------------------------------------------------------------------------------------------------------------------------ELPLKVPDFVTETAEKAAGKRYVSVESSGLHFILDLLGKIESLK-VKGKEISSKFEG---------------------SSEPRDFKNWKKY-----NIDL---------MKQNIHGVSVEKGSNGSLAVVTVNSRSPVVFYYGFANKINLNTSMKLTGEY |
10 | 3tnfB | 0.12 | 0.11 | 3.86 | 0.82 | PROSPECTOR2 | | L-------DEYEQAIKRAQENIKKGELDKLERQGKDLEDKYKTYEENLEGFE--KLLTDSEELSLSEINEKMEA------FSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANL---------QVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQIMSTDPKENEEATKLFNEKGEEVTSLNDAHYVGKDQQLFNLGGKFYPIHKEQKILEK----DGKFYLLKQGEDWESIKDSQYETPMTVKKLVHHNKSK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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