Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | CSNSGESPVIKIEKLYVKAEPDSDSAKEEDYANKMDELPALKVGDEVKALLLLDGNGAELKTFKLQKDNDEALDTKLNYEKNEVSTEGNLTDEENGQLRFKDGVTQTKVLVQATIKQVDKNGDVRLEFYLSSKAECEGAQEEIGLKT |
1 | 5cf3A1 | 0.13 | 0.12 | 4.02 | 0.68 | SPARKS-K | | -GSNNVNDLITVTKQMITEGIKDDG------VIQAHDGEHI----IYTSDFKIDNAVKAGDTMTVKDITDDFTPVDITDPSGEVIAKGTFDLNTKITYKFTDYVDNAKLELNSYIDKVPNETNLNLTFATAD----KETSKNVKVEY |
2 | 5eq2A1 | 0.18 | 0.13 | 4.21 | 0.56 | FFAS-3D | | RATDTTPPTITVPDIIA------------------------YRGEEFEFYFEITDDSGQVKNIELSTFGKPLGLNWLEYSEDNFNVPGNATSDNPLRVRVHGTVPLNEPQFTRTIRAWDAAGNVNITFVI----------------- |
3 | 3l8qA1 | 0.17 | 0.13 | 4.24 | 0.29 | HHpred | | ----APTSSI-----EIVLD-----------------KTTASVGEIVTASINIKN-ITNFSGCQLNYDPAV-LQPVT-SSGVAKSGAGTFNDLEKGILNFSKAPEQTGTVAVVKFKVLK-EETSSISFEDTTSVP-NAIDGT----- |
4 | 5cf3A1 | 0.15 | 0.14 | 4.58 | 0.79 | MUSTER | | -GSNNVNDLITVTKQMITEGIKDDGVIQAHDGEHIIKIDAVKAGDTMTVKY---------KHTIPSDITDDFTPVDITDPSGEVIAKGTFDLNTKITYKFTDYVDKLELNSYIDKKEVPNETNLNLTFATADKE----TSKNVKVEY |
5 | 4ziqA | 0.08 | 0.05 | 2.18 | 0.87 | CNFpred | | --------KVIVAPVIAELNM----------------PRFMASGDTSRLTLDITNLTDKPQKLNVALTASGLLELV---------------SDSPAAVELAP---GVRTTLFIPVRALPGYGDGEIQATISGLATVADQHKQWKIGV |
6 | 4iu2A | 0.17 | 0.13 | 4.27 | 0.47 | HHsearch-2 | | GSSAATKPVLEVTKKVFDTA-------------------ADAAGQTVTVEFKVSGAEGKYAGYHIYWDER--LEVVA-TKTGAYAKKGASSLAENNGNGV---------FVASGDDDFGADGV--WTVELKVPADAKGDVYPIDVAY |
7 | 2q7aA | 0.10 | 0.10 | 3.54 | 0.84 | Neff-PPAS | | -MDKGQIYGSIIQRNYRHPIS-GQIEDSGGEHSFDIGQGMVEGTVYSDAMLEVSDAGKIVLTFRMSLADQPGGTGSFQAVDYNITQKGTDTNGTTLDIAISLPTVNSIIRGSMFVEPM--GREVVFYLSASELIQKYSGNMLAQLVT |
8 | 4uypA | 0.14 | 0.11 | 3.70 | 0.51 | HHsearch | | -------------MLQVDI-----------------GSTSGKAGSVVSVPITFTNVKSGIYALSFRFDPQK-VTVA-SIDAGSLIENSDFTNNENGFASMTRIIDSDGVFATINFKVSDSVGLYNITTNSATSFYYGT--DEIKVV- |
9 | 5cf3A1 | 0.14 | 0.13 | 4.40 | 0.62 | SP3 | | -GSNNVNDLITVTKQMITEGIKDDGVIQAHDGEHIIKIDNVKAGDTMTVKYD--------KHTIPSDITDDFTPVDITDPSGEVIAKGTFDLNTKITYKFTDYVDRLELNSYIDKKEVPNETNLNLTFATADKE----TSKNVKVEY |
10 | 4s3lA1 | 0.13 | 0.12 | 4.26 | 0.56 | PROSPECTOR2 | | KANGENNAVVKINKTLNIAEGITTPTKTGQSSNGAPYQTGVAIPDR---NVEYNKNDHPTADKIQKATEDIFSGVAYGHAAKTGWQAITKNGKTIDAMRY----DKRTYEMHVIVKNKVNGGVYISSVYFKENNKSNAPKVESSEQT |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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